An active texture-based digital atlas enables automated mapping of structures and markers across brains. Yuncong Chen, Lauren E. McElvain, Alexander S. Tolpygo, Daniel Ferrante, Beth Friedman, Partha P. Mitra, Harvey J. Karten, Yoav Freund & David Kleinfeld. Nature Methods (2019/3/11)
Associated Neuroglancer viewer of the three foundational thionin brains available here.
- User Guide: This document will walk through how to start running a brain through the pipeline, and how to continue running the pipeline.
- GUI-based User Guide: This document explains how to set up and run the project's Docker Image, as well as how to run the GUI-based pipeline.