Pinned Repositories
7T-DSC-MRI-Toolbox
This toolbox provides functions and pipeline to process Dynamic Susceptibility Contrast MRI data acquired at 7T. In particular, code is provided to correct for effective TR due to cardiac gating and breathing frequency filtering.
advanced_fMRI_course
List of ressources and practicals used for the fMRI data analysis course of UoB (UK) (2014-2017)
advanced_neuro_recon_book_chapter
Code to reproduce the experiments for the image reconstruction chapter of the textbook Advanced Neuro MR Techniques and Applications
afni
Official AFNI source and documentation
AM_multiband
Simple optimization to compute slice phase offsets for multi-band RF pulses
AMICO
Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data
ANNCEST
This toolbox contains Matlab files that implement the ANNCEST MRI
aslprep
epg-matlab
Extended Phase Graph (EPG) algorithm for multi-pulse MR experiments
susceptibility-imaging-toolkit
The Susceptibility Imaging Toolkit provides functions for Quantitative Susceptibility Mapping (QSM) analysis of brain MRI images.
AdamWu1979's Repositories
AdamWu1979/aslprep
AdamWu1979/DCE-DSC-MRI_CodeCollection
DCE-/DSC-MRI processing code, collected, tested and made available to all.
AdamWu1979/dicm2nii
DICOM to NIfTI conversion, NIfTI tools
AdamWu1979/DOSMA
An AI-powered open-source medical image analysis toolbox
AdamWu1979/education_DTI_processing
AdamWu1979/education_SENSE_MRI
AdamWu1979/epi_corrections
Pipeline for correction of magnetic susceptibility induced geometric and intensity artefacts in Dynamic Susceptibility Contrast (DSC) Echo-Planar Imaging (EPI) Magnetic Resonance Imaging (MRI) images. The correction methods used are FSL TOPUP and EPIC
AdamWu1979/eptlib
EPTlib - An open-source, extensible C++ library of electric properties tomography methods
AdamWu1979/ihMT-project
AdamWu1979/ihMTRAGE-optimize
Matlab code for simulation of ihMT experiment using MPRAGE like sequence
AdamWu1979/imtool3D_td
3D Image Viewer with ROI tools for Matlab ( NIFTI viewer, Manual segmentation )
AdamWu1979/IVIM-DKI-MRMP2021
A package providing MATLAB programming tools for IVIM-DKI analysis with total variation (TV) penalty function.
AdamWu1979/Joint_Reconstruction_Synthetic_MR
AdamWu1979/LowRank_MRMOTUS
AdamWu1979/mati
MATI (Microstructural Analysis of Tissues by Imaging)
AdamWu1979/MDT
Microstructure Diffusion Toolbox
AdamWu1979/MONAI
AI Toolkit for Healthcare Imaging
AdamWu1979/MTsatB1correction
Code to correct B1+ inhomogeneities in MTsat images.
AdamWu1979/NeuroImagingMatlab
Handy scripts for processing MRI data
AdamWu1979/OptimizeIHMTimaging
MATLAB code for Bloch simulations of FLASH sequences with and without MT-weighting.
AdamWu1979/packing-generation
Hard-sphere packing generation with the Lubachevsky–Stillinger, Jodrey–Tory, and force-biased algorithms and packing post-processing.
AdamWu1979/pyGRASP
AdamWu1979/QSMxT
An automated and scalable QSM pipeline
AdamWu1979/RAREzero
AdamWu1979/remmi-matlab
Matlab toolbox to reconstruct and process MRI data
AdamWu1979/sepia
Matlab GUI pipeline application for quantitative susceptibility mapping (QSM)
AdamWu1979/Tensor-MP-PCA
MP-PCA based denoising of multidimensional data
AdamWu1979/TF2.4_IVIM-MRI_CodeCollection
OSIPI TF2.4: IVIM MRI code collection
AdamWu1979/TORTOISEV4
Official TORTOISE Diffusion MRI Processing Pipeline V4 Source Code and Documentation
AdamWu1979/tutorials
MONAI Tutorials