AdityaSavara/PEUQSE

Issues

• tracking and exporting time for simulation

  #339 opened 9 months ago by ChrisBNEU
  1

• Output more information when credible intervals are far from prior/likelihood

  #338 opened a year ago by AdityaSavara
  0

• Change Astroidal to Random in higher dimensions

  #335 opened 2 years ago by AdityaSavara
  2

• def generateInitialPoints should be moved out of the PE_object class

  #334 opened 2 years ago by AdityaSavara
  0

• The initial test simulation with test parameters of[0.2]failed with error bad operand type for unary -: 'tuple'

  #333 opened 2 years ago by dikshakadre
  0

• mu_prior should be added to mcmc_log_file.txt

  #332 opened 2 years ago by AdityaSavara
  0

• Cantera YAML example needs comments

  #323 opened 2 years ago by AdityaSavara
  0

• Example 00c10 has become broken

  #322 opened 2 years ago by AdityaSavara
  0

• parameter_estimation_settings['multistart_keep_cumulative_post_burn_in_data'] = True

  #317 opened 2 years ago by AdityaSavara
  0

• CiteSoft crash

  #314 opened 2 years ago by AdityaSavara
  0

• plots to show the progress of the posterior changing with time

  #313 opened 2 years ago by AdityaSavara
  0

• improved exception handling in doEnsembleModifiedMH (doEnsembleJumpSampling)

  #312 opened 2 years ago by AdityaSavara
  0

• Make initial guess handle a numpy array of points for walker starting points

  #273 opened 2 years ago by TroyGustke
  2

• Thinning

  #311 opened 2 years ago by AdityaSavara
  0

• Use Raftery_lewis to generate new samples in continued sampling.

  #240 opened 2 years ago by TroyGustke
  0

• continue sampling is not completely compatible with multiple walkers

  #217 opened 3 years ago by AdityaSavara
  1

• warnings and multistart flag

  #293 opened 2 years ago by AdityaSavara
  1

• graphs naming improvements

  #310 opened 2 years ago by AdityaSavara
  0

• Convergence Diagnostics Related Improvements

  #309 opened 2 years ago by AdityaSavara
  0

• logfile improvement

  #295 opened 2 years ago by AdityaSavara
  1

• soft bounds

  #303 opened 2 years ago by AdityaSavara
  0

• Make density calculation in calculateInfoGain use numpy

  #299 opened 2 years ago by TroyGustke
  0

• Create Simulated Responses plots skipping for single response

  #286 opened 2 years ago by TroyGustke
  0

• Functionalize code that loads initial guess in sampler functions called loadInitialWalkerPositions()

  #285 opened 2 years ago by TroyGustke
  0

• Readme needs to be updated

  #282 opened 2 years ago by AdityaSavara
  0

• Plot multiple modes/samplings

  #281 opened 2 years ago by TroyGustke
  0

• create plots failing under certain circumstances

  #271 opened 2 years ago by AdityaSavara
  3

• MCMC (especially ESS) should export each walker's initial points to logfile

  #219 opened 3 years ago by AdityaSavara
  0

• weightings for new samplers need to be made for permutationsToSamples

  #262 opened 2 years ago by AdityaSavara
  0

• find_MAP

  #216 opened 2 years ago by AdityaSavara
  1

• Filtering Ensemble chains

  #254 opened 2 years ago by AdityaSavara
  0

• Increase Plotting capabilities with arviz

  #241 opened 2 years ago by TroyGustke
  1

• Convergence diagnostics plots need plot settings

  #248 opened 2 years ago by TroyGustke
  0

• Numpa implementation for Plotting

  #242 opened 2 years ago by TroyGustke
  0

• Odd warning during Example13doeFunctionExample unit tests

  #238 opened 2 years ago by TroyGustke
  0

• add 'sobol' and "latin hypercube' as distribution types (like 'uniform') and Variance-based sensitivities

  #171 opened 4 years ago by AdityaSavara
  1

• Example 5b: doOptimizeNegLogP posterior plot does not show initial guess

  #230 opened 2 years ago by AdityaSavara
  1

• info gain should have option of None

  #218 opened 3 years ago by AdityaSavara
  0

• plotting posterior responses distribution

  #206 opened 3 years ago by AdityaSavara
  0

• Convergence Criteria

  #207 opened 3 years ago by AdityaSavara
  0

• getLogP effiency optimization for when bounds are on.

  #199 opened 3 years ago by AdityaSavara
  1

• ESS inputs should be possible directly from UserInputFile

  #202 opened 3 years ago by AdityaSavara
  1

• passthrough arguments for doOptimize & bounds

  #204 opened 3 years ago by AdityaSavara
  1

• export quartiles of posteriors

  #205 opened 3 years ago by AdityaSavara
  0

• multistart_gridssearchToSamples and filters should be renamed.

  #187 opened 3 years ago by AdityaSavara
  1

• reload samples function so can re-plot separate from filtering options in dill

  #194 opened 3 years ago by AdityaSavara
  2

• histograms should be have option to show probability density

  #193 opened 3 years ago by AdityaSavara
  1

• runfile 00 unit test should be improved or an additoinal one added

  #189 opened 3 years ago by AdityaSavara
  0

• add custom prior examples

  #185 opened 4 years ago by AdityaSavara
  0

• Parallel Sampling Multistart using multiprocessing pool instead of MPI

  #179 opened 4 years ago by AdityaSavara
  0