Pinned Repositories
big-list-of-naughty-strings
The Big List of Naughty Strings is a list of strings which have a high probability of causing issues when used as user-input data.
clean_mlst_results
Simple script for cleaning and collating MLST result files
colltyper
Typing of TB using Coll-2015 scheme
Datasets
A collection of public datasets
GlobalL4scripts
A collection of scripts used for the global L4 MTB phylogeography paper
pooledsampling-covid-simulation
Estimating the effect of pooled sampling in testing for Covid-19 through simulations in R
PuppetMaster
Tools for manipulating sequencing data, multiple sequence alignments and phylogenetic trees
Scoary
Pan-genome wide association studies
Simulate_pan_genome
Simulates a pan-genome
snp-dists
Pairwise SNP distance matrix from a FASTA sequence alignment
AdmiralenOla's Repositories
AdmiralenOla/Scoary
Pan-genome wide association studies
AdmiralenOla/GlobalL4scripts
A collection of scripts used for the global L4 MTB phylogeography paper
AdmiralenOla/PuppetMaster
Tools for manipulating sequencing data, multiple sequence alignments and phylogenetic trees
AdmiralenOla/Simulate_pan_genome
Simulates a pan-genome
AdmiralenOla/big-list-of-naughty-strings
The Big List of Naughty Strings is a list of strings which have a high probability of causing issues when used as user-input data.
AdmiralenOla/clean_mlst_results
Simple script for cleaning and collating MLST result files
AdmiralenOla/pooledsampling-covid-simulation
Estimating the effect of pooled sampling in testing for Covid-19 through simulations in R
AdmiralenOla/snp-dists
Pairwise SNP distance matrix from a FASTA sequence alignment
AdmiralenOla/colltyper
Typing of TB using Coll-2015 scheme
AdmiralenOla/Datasets
A collection of public datasets
AdmiralenOla/dist-outliers
Detection of outliers in distance matrices
AdmiralenOla/emm_typing
Typing of emm genes in Streptococcus pyogenes
AdmiralenOla/ffiscripts
A collection of scripts used during my time at FFI
AdmiralenOla/fhiscripts
AdmiralenOla/filter-plasmid-contigs-bacillus
A script for filtering contigs by header name
AdmiralenOla/lombardy-norway
Data about flights between Norway and Lombardy, and nCoV-19 cases
AdmiralenOla/niph_tb_pipeline
WGS pipeline for Mycobacterium tuberculosis at the Norwegian Institute of Public Health (NIPH)
AdmiralenOla/originator
Rotate circular replicon to start with dnaA gene
AdmiralenOla/stx_subtyping
AdmiralenOla/tartrate
Script to differentiate typhoid and non-typhoid Salmonella by analysis of the STM3356 ORF
AdmiralenOla/tb
Nextstrain build for tuberculosis
AdmiralenOla/tb-moldova
AdmiralenOla/tb-moldova-203
AdmiralenOla/tb-moldova-203-alt
AdmiralenOla/tb-moldova-full