Admire7494

Pinned Repositories

• esm

  Evolutionary Scale Modeling (esm): Pretrained language models for proteins

  Language:Python3.1k64320615

• epistasis

  A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.

  Language:Python3361111

• transformers

  🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

  Language:Python132k1.1k15.6k26.2k

• Fine-tune-large-language-model

  This repository contains scripts/notebook to fine-tune large language models with a set of proteins/peptides interest. The fine tuning was done with AAV protein dataset which has fitness/viral assembly data.

  Language:Jupyter Notebook30

• gmx_MMPBSA

  gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.

  Language:Python211946764

Admire7494's Repositories