AgustinPardo/phylogeography

R

phylogeography of COVID-19


Authors	Agustin Maria Pardo
Github	AgustinPardo
Email	agustinmpardo@gmail.com

phytools (http://www.phytools.org/)

Lineajes by Pangolin COVID-19 Lineage Assigner (https://pangolin.cog-uk.io/)

Code in: tree.map.R

Example inputs in phylotree.example folder:

Phylogenetic Tree tree.example.nwk
GPS coordinates gps_data.example.dat
Pangolin lineages linajes.example.txt

microreact (https://microreact.org)

Lineajes by Pangolin COVID-19 Lineage Assigner (https://pangolin.cog-uk.io/) and Covidex (https://sourceforge.net/projects/covidex/)

TreeTom (https://camayal.info/wa/treetom/)

Lineajes by Pangolin COVID-19 Lineage Assigner (https://pangolin.cog-uk.io/) and Covidex (https://sourceforge.net/projects/covidex/)

Flourish (https://flourish.studio/)

Gengis (http://kiwi.cs.dal.ca/GenGIS/Main_Page)

SPREAD (https://www.kuleuven.be/aidslab/phylogeography/home.html)

Folium https://python-visualization.github.io/folium/

Case references used