Ahmed-Ghobashi

Computational biologist at Qin Ma's Lab

Indiana University-Bloomington

Pinned Repositories

BMBL-analysis-notebooks
A collection of bioinformatics data analysis notebooks focused on providing examples of current best practices in single-cell analysis.
Language:HTML00
py
Repository to store sample python programs for python learning
Language:Jupyter Notebook00
RNA-seq
'Automation of RNA-seq from terminal. This package performs fastqc, generate genome index, aligning the genome and generating count matrix'
Language:Python00
signac
R toolkit for the analysis of single-cell chromatin data
Language:R33188
SCEVAN
R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.
Language:HTML9324
BMBL-analysis-notebooks
A collection of bioinformatics data analysis notebooks focused on providing examples of current best practices in single-cell analysis.
Language:HTML118

Ahmed-Ghobashi/BMBL-analysis-notebooks
A collection of bioinformatics data analysis notebooks focused on providing examples of current best practices in single-cell analysis.
Ahmed-Ghobashi/RNA-seq
'Automation of RNA-seq from terminal. This package performs fastqc, generate genome index, aligning the genome and generating count matrix'
Language:Python
Ahmed-Ghobashi/py
Repository to store sample python programs for python learning