Pinned Repositories
alphatims
An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.
berkeley-stat-157
Homepage for STAT 157 at UC Berkeley
compMS2Miner
metabolite identification R-package for metabolomic high-resolution LC-MS datasets.
compomics-utilities
Open-source java library for computational proteomics
DataStructures-Algorithms
The best library for implementation of all Data Structures and Algorithms - Trees + Graph Algorithms too!
deep-learning
Repo for the Deep Learning Nanodegree Foundations program.
DIA-Umpire
Computational analysis for mass spectrometry-based proteomics data
DiaNN
DIA-NN - a universal automated software suite for DIA proteomics data analysis.
pClean
pClean_release
pClean: a tool for MS/MS spectrum preprocessing
AimeeD90's Repositories
AimeeD90/pClean_release
pClean: a tool for MS/MS spectrum preprocessing
AimeeD90/pClean
AimeeD90/alphatims
An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.
AimeeD90/berkeley-stat-157
Homepage for STAT 157 at UC Berkeley
AimeeD90/compMS2Miner
metabolite identification R-package for metabolomic high-resolution LC-MS datasets.
AimeeD90/compomics-utilities
Open-source java library for computational proteomics
AimeeD90/DataStructures-Algorithms
The best library for implementation of all Data Structures and Algorithms - Trees + Graph Algorithms too!
AimeeD90/deep-learning
Repo for the Deep Learning Nanodegree Foundations program.
AimeeD90/DIA-Umpire
Computational analysis for mass spectrometry-based proteomics data
AimeeD90/DiaNN
DIA-NN - a universal automated software suite for DIA proteomics data analysis.
AimeeD90/dinosaur
Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.
AimeeD90/ecotyper
EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
AimeeD90/iq
An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
AimeeD90/LeetCode-2
All 180 problem solutions
AimeeD90/msgfplus
MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database.
AimeeD90/OpenMS
The codebase of the OpenMS project
AimeeD90/Oreilly-Learning-TensorFlow
AimeeD90/plotly.R
An interactive graphing library for R
AimeeD90/prosit
ProteomeTools Spectrum predIction Tool
AimeeD90/Public_Packages
AimeeD90/pydiaid
An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Institute of Biochemistry.
AimeeD90/scarches
Query to reference mapping for single-cell genomics
AimeeD90/xtandem-parser
Java based parser for X!Tandem output xml files