Pinned Repositories
atacseq
ATAC-seq peak-calling, QC and differential analysis pipeline
awesome-compbio-chatgpt
An awesome repository of community-curated applications of ChatGPT and other LLMs im computational biology
biotools
A list of useful bioinformatics resources
cdot
Transcript versions for HGVS libraries
DiabPred
Type 2 diabetes prediction based on genomic data with deep learning algorithms
getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
hla_pipeline
DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions
long_read_wgs
NeoPred-NF
Nextflow implementation of Neoantigen prediction with HLA-typing grouping matched normal-tumor WGS/WES and tumor RNA-seq
SLA
Skin Lesion Analyser
Akazhiel's Repositories
Akazhiel/NeoPred-NF
Nextflow implementation of Neoantigen prediction with HLA-typing grouping matched normal-tumor WGS/WES and tumor RNA-seq
Akazhiel/atacseq
ATAC-seq peak-calling, QC and differential analysis pipeline
Akazhiel/awesome-compbio-chatgpt
An awesome repository of community-curated applications of ChatGPT and other LLMs im computational biology
Akazhiel/biotools
A list of useful bioinformatics resources
Akazhiel/cdot
Transcript versions for HGVS libraries
Akazhiel/DiabPred
Type 2 diabetes prediction based on genomic data with deep learning algorithms
Akazhiel/getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
Akazhiel/hla_pipeline
DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions
Akazhiel/long_read_wgs
Akazhiel/Micropep
Pipeline to identify putative micropeptides from alignment BAM files.
Akazhiel/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Akazhiel/SLA
Skin Lesion Analyser
Akazhiel/pMTnet
Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
Akazhiel/pure-sh-bible
📖 A collection of pure POSIX sh alternatives to external processes.
Akazhiel/RNA-Seq-Analysis
Akazhiel/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Akazhiel/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
Akazhiel/SVDB
structural variant database software
Akazhiel/toyplot
Interactive plotting for Python.