Akmazad

Pinned Repositories

23moyamoya
Language:Python00
4mentgrp.github.io
Language:HTML00
BNMCMC-Server
Language:C#00
COVID_CDR
Language:R00
DeepDNAseq
DNA-seq analysis with deep learning using Keras (Tensorflow)
Language:Python10
deepPsych
Deep learning in predicting functional effects of noncoding variants in brain-specific disorders
Language:Jupyter Notebook01
Drug-Repositioning
Interface for measuring, and visualizing Drug-Drug similarity information
Language:R10
DrugSimDB
A database of Drug-Drug similarity information for drug repositioning and beyond
Language:R21
IMAMU_STA111_1444_S2
Course codes
Language:R10
PathTurbEr
Pathway Perturbation Driver identification
Language:C#10

Akmazad's Repositories

Akmazad/Unsupervised_Clustering_for_Gene_Expression_data
Cancer subtype discovery using consensus clustering approach to find pattern in expression data (RNA-seq)
Akmazad/KPGminer
KPGminer: a tool for retrieving pathway genes from kegg pathway database
Language:C#
Akmazad/CellOracle
This is the alpha version of the CellOracle package
Akmazad/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers
aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)
Akmazad/depmap-analysis
This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between genes and helps predict the efficacy and selectivity of candidate cancer drugs"
Akmazad/alphamap
An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
Akmazad/Prep4DeepDEP
R package to prepare data for DeepDEP
Akmazad/thp-lopit-2021
Akmazad/Drug-Repositioning
Interface for measuring, and visualizing Drug-Drug similarity information
Language:R1
Akmazad/ehr-vha
Akmazad/MenzClubSoftballLeague
A database system for managing a softball league
Language:JavaScript
Akmazad/msdap
MS-DAP: downstream analysis pipeline for quantitative proteomics
Akmazad/XTalkiiS
Find data-driven crosstalks among inter-/intra-species signalling pathways
Language:C#
Akmazad/BNMCMC-Server
Language:C#
Akmazad/neovis.js
Neo4j + vis.js = neovis.js. Graph visualizations in the browser with data from Neo4j.
Akmazad/GCP-commands
Akmazad/NatureMethodsPrimer_NetworkAnalysis
This repository holds data and code for the paper "Network approaches to the analysis of multivariate data in psychological science"
Akmazad/batch_effects_workflow_code
Code accompanying batch effects processing workflow for "omic" data, mainly targeted for proteomics
Akmazad/janis-bioinformatics
Repository of bioinformatics tools for the pipelines module
Akmazad/gtex-pipeline
GTEx & TOPMed data production and analysis pipelines
Akmazad/DIAtools
Akmazad/COVID-19
Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19
Akmazad/shinyDepMap
A shiny-based web tool for interactive analysis of DepMap data
Akmazad/Az_nf_tutorial
Akmazad/hail-cloud-docs
Akmazad/DiffCorr
Akmazad/SLE-mWGCNA
Multi-cell type gene co-expression network analysis reveals coordinated interferon response and cross cell-type correlations in SLE
Akmazad/4mentgrp.github.io
Akmazad/HypHC
Hyperbolic Hierarchical Clustering.
Akmazad/libsbn
Python-interface C++ library for variational Bayesian phylogenetics