Albluca
Data Scientist / Computational biologist working on single cell data analysis
@sysbio-curie Institut Curie Paris, France
Pinned Repositories
Dhaka
distutils
A fast implementation of distance computation with RCpp
DockerCollection
A collection of Docker images to run different softwares
ElPiGraph.P
Python implementation of the Elastic Principal Graphs (ElPiGraph) method
ElPiGraph.R
An R package to construct Elastic Principal Graphs
ImmuneModelSEER
The code used in "Thymic involution can explain age-related disease incidence" by S. Palmer, L. Albergante, C Blackburn, and T Newman
RNaviCell
R interface for interaction with NaviCell maps
rpgraph
An r package to compute princial graphs
rRoma
An r interface to perform ROMA
rRomaDash
a shiny dashboard to interact with rRoma
Albluca's Repositories
Albluca/ElPiGraph.R
An R package to construct Elastic Principal Graphs
Albluca/rRoma
An r interface to perform ROMA
Albluca/ElPiGraph.P
Python implementation of the Elastic Principal Graphs (ElPiGraph) method
Albluca/Dhaka
Albluca/rRomaDash
a shiny dashboard to interact with rRoma
Albluca/distutils
A fast implementation of distance computation with RCpp
Albluca/academic-kickstart
Albluca/albluca.github.io
Website
Albluca/BalanceOfThrones
Albluca/ElPiCycle
A R package to learn and stage cell cycle using principal curve
Albluca/ElPiGraph.Dash
Albluca/graph_abstraction
Generate cellular maps of differentiation manifolds with complex topologies.
Albluca/hugo-academic
The website designer for Hugo. Build and deploy a beautiful website in minutes :rocket:
Albluca/hugo-academic-mod
Albluca/Macaque
Albluca/netsne
Albluca/pagoda2
R package for analyzing and interactively exploring large single-cell RNA-seq datasets
Albluca/PQSQ-DataApproximators
Matlab and Java implementations of data analysis methods based on piece-wise quadratic approximation error (PQSQ)
Albluca/PrecisionMedicineMelanoma
Albluca/pydata-book
Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media
Albluca/rpgraph2
Albluca/single_cell_portal_core
Rails/Docker application for the Broad Institute's single cell RNA-seq data portal
Albluca/singleCellTK
Interactively Analyze scRNA-Seq Data
Albluca/SpatialDE
Test genes for Spatial Variation
Albluca/SPRING
Albluca/SPRING_dev
Albluca/SPRINGeR
A package to use SPRING from R
Albluca/STREAM
STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data
Albluca/sysbio-curie.github.io
Sysbio Curie website
Albluca/URD
URD - Reconstruction of Branching Developmental Trajectories