Pinned Repositories
AF_estimate_pyvcf
This python script takes a vcf file and calculates allele frequencies using genotype likelihoods for a subset of individuals at specific loci using the method of Kim et al. BMC Bioinformatics 2011
bioWDL_RNAseq
A collection of BioWDL workflows for aligning sequencing data.
bravo
BRowse All Variants Online
bravo-pipeline
Data preparation pipeline for BRAVO
CMGpipeline
cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
cromwell-tools
A collection of Python clients and accessory scripts for interacting with the Cromwell
DeepVariantProject
delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
docker-annotsv-cwl
Docker container for running AnnotSV
AlesMaver's Repositories
AlesMaver/AF_estimate_pyvcf
This python script takes a vcf file and calculates allele frequencies using genotype likelihoods for a subset of individuals at specific loci using the method of Kim et al. BMC Bioinformatics 2011
AlesMaver/bioWDL_RNAseq
A collection of BioWDL workflows for aligning sequencing data.
AlesMaver/bravo
BRowse All Variants Online
AlesMaver/bravo-pipeline
Data preparation pipeline for BRAVO
AlesMaver/CMGpipeline
AlesMaver/cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
AlesMaver/cromwell-tools
A collection of Python clients and accessory scripts for interacting with the Cromwell
AlesMaver/DeepVariantProject
AlesMaver/delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
AlesMaver/docker-annotsv-cwl
Docker container for running AnnotSV
AlesMaver/docker_bcftools
AlesMaver/ExpansionHunter
A tool for estimating repeat sizes
AlesMaver/fpdf2
Simple PDF generation for Python
AlesMaver/gatk
Official code repository for GATK versions 4 and up
AlesMaver/gatk-sv
AlesMaver/igv.js-flask
Example project for integrating igv.js and flask
AlesMaver/next-platform-starter
AlesMaver/pdfrw
pdfrw fork to store the add page at index fix
AlesMaver/scramble
Forking the default scramble directory
AlesMaver/SGP
Slovenski genomski projekt / Slovenian genome project
AlesMaver/sqlalchemy-datatables
SQLAlchemy integration of jQuery DataTables >= 1.10.x (Pyramid and Flask examples)
AlesMaver/structural-variantcalling
A workflow for calling structural variants. Category:Single-Sample
AlesMaver/vep_docker