Pinned Repositories
AlessioMilanese.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
bioconda-recipes
Conda recipes for the bioconda channel.
classify-genomes
Classify a genome sequence according to the mOTUs/specI taxonomy
evaluate_AUC
Assess the potential dependence of the AUC on the number of positive cases
extract_regions_16s
A tool to extract variable regions from 16S gene sequences
FISH_probes
Scripts to design FISH probes for 16S sequences
progenomes_classifier
a tool to classify genomes into the specI taxonomy
Threshold_q-gram_distance
a k-mer based string distance
mOTUs
motus - a tool for marker gene-based OTU (mOTU) profiling
stag
A hierarchical taxonomic classifier for metagenomic sequences
AlessioMilanese's Repositories
AlessioMilanese/classify-genomes
Classify a genome sequence according to the mOTUs/specI taxonomy
AlessioMilanese/progenomes_classifier
a tool to classify genomes into the specI taxonomy
AlessioMilanese/AlessioMilanese.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
AlessioMilanese/bioconda-recipes
Conda recipes for the bioconda channel.
AlessioMilanese/evaluate_AUC
Assess the potential dependence of the AUC on the number of positive cases
AlessioMilanese/extract_regions_16s
A tool to extract variable regions from 16S gene sequences
AlessioMilanese/FISH_probes
Scripts to design FISH probes for 16S sequences
AlessioMilanese/krakenuniq
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
AlessioMilanese/read_counter
Tool to count reads that map to a set of sequences
AlessioMilanese/Threshold_q-gram_distance
a k-mer based string distance
AlessioMilanese/MAPseq
highthroughput rRNA sequence classification and OTU mapping for metagenomic samples
AlessioMilanese/Methods_in_Microbiomics
AlessioMilanese/motus_taxonomy
AlessioMilanese/RAMBL
Large-scale 16S gene assembly using metagenomic shotgun sequences
AlessioMilanese/simulate_reads
Naive python script to simulate reads
AlessioMilanese/TAMPA
A collection of tools to visualize CAMI profiling outputs
AlessioMilanese/test_merge