Pinned Repositories
alexcoul.github.io
A beautiful, simple, clean, and responsive Jekyll theme for academics
BioImViz
Visualize and annotate bio-images.
BIRSBIO2020.seqFISH.neighbors_aggregation
My analyses for the seqFISH challenge for the BIRS Biointegration workshop.
cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
CZI_single_cell_biology_annual_meeting
More info about the poster presented at this event.
deeds-registration
Python wrapper around DEEDS - efficient algorithm for 3D discrete deformable image registration, reaching the highest accuracy in several benchmarks
mosna
mosna stands for multi-omics spatial network analysis
multiOmics_integration
napari-image-stacker
A little napari plugin to convert multiple open images to a stack and vice versa
napari-micromanager
AlexCoul's Repositories
AlexCoul/BioImViz
Visualize and annotate bio-images.
AlexCoul/multiOmics_integration
AlexCoul/alexcoul.github.io
A beautiful, simple, clean, and responsive Jekyll theme for academics
AlexCoul/BIRSBIO2020.seqFISH.neighbors_aggregation
My analyses for the seqFISH challenge for the BIRS Biointegration workshop.
AlexCoul/cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
AlexCoul/CZI_single_cell_biology_annual_meeting
More info about the poster presented at this event.
AlexCoul/deeds-registration
Python wrapper around DEEDS - efficient algorithm for 3D discrete deformable image registration, reaching the highest accuracy in several benchmarks
AlexCoul/mosna
mosna stands for multi-omics spatial network analysis
AlexCoul/napari-image-stacker
A little napari plugin to convert multiple open images to a stack and vice versa
AlexCoul/napari-micromanager
AlexCoul/napari-spot-detection
Detect spots in 3D images
AlexCoul/whitePaper
Manubot for white paper
AlexCoul/test_page