AlexPersa7

Scientific Research Center of Jalisco, CIATEJCamino Arenero 1227, El Bajío, 45019 Zapopan, Jal.

Pinned Repositories

AlexPersa7.github.io
0 1 00
appliedgenomics2017
JHU EN.600.649: Computational Genomics: Applied Comparative Genomics
Language:HTML0 1 00
appliedgenomics2018
Materials for Spring 2018 Applied Genomics Course
Language:Jupyter Notebook0 1 00
ARMOR
Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
Language:R0 1 00
Artemis
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Language:Java0 1 00
Augustus
Genome annotation with AUGUSTUS
Language:C++0 1 00
bamtools
C++ API & command-line toolkit for working with BAM data
Language:C++0 1 00
Bandage
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
Language:C++0 1 00
bash_scripts
Custom-made bash scripts
Language:Shell00
MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
Language:C++1 1 00

AlexPersa7's Repositories

AlexPersa7/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
Language:C++1 1 00
AlexPersa7/AlexPersa7.github.io
0 1 00
AlexPersa7/ARMOR
Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
Language:R0 1 00
AlexPersa7/cdsb_test
test de repo
AlexPersa7/CheckM
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Language:Python1 0
AlexPersa7/freebayes
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
Language:C++1 0
AlexPersa7/FriendsDontLetFriends
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
AlexPersa7/GALA
Long-reads Gap-free Chromosome-scale Assembler
Language:Python0 0
AlexPersa7/GENESPACE
AlexPersa7/genome-mining
Genome Mining in Prokaryotes
AlexPersa7/gggenomes
A grammar of graphics for comparative genomics
Language:R0 0
AlexPersa7/hal
Hierarchical Alignment Format
AlexPersa7/Liftoff
An accurate GFF3/GTF lift over pipeline
Language:Python1 0
AlexPersa7/lotus2
Amplicon sequencing pipelines suitable for 16S, 18S and ITS.
Language:C++1 0
AlexPersa7/make_SILVA_db
General procedure for making QIIME 2 compatible SILVA reference files
Language:Python1 0
AlexPersa7/megalodon
Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.
Language:Python1 0
AlexPersa7/mi_libro
2 0
AlexPersa7/mi_presentacion
bookdown edmo & xaringan
Language:JavaScript2 0
AlexPersa7/NextDenovo
Fast and accurate de novo assembler for long reads
AlexPersa7/pkgMetagenomica
What the Package Does (One Line, Title Case)
Language:R
AlexPersa7/plotsr
Tool to plot synteny and structural rearrangements between genomes
Language:Python1 0
AlexPersa7/project_v2
proyecto git_win
Language:R2 0
AlexPersa7/RaGOO
Fast Reference-Guided Scaffolding of Genome Assembly Contigs. RagTag, the successor to RaGOO, is now available here: https://github.com/malonge/RagTag
AlexPersa7/RagTag
Fast reference-guided genome assembly scaffolding
Language:Python1 0
AlexPersa7/repo_cdsb2022
Esto es una descripción de prueba
AlexPersa7/scripting_linux_shell
A collection of recipes to start scripting in the linux command line
Language:Perl1 0
AlexPersa7/scRNA-Seq_notas_curso
Language:R1 0
AlexPersa7/seqtk
Toolkit for processing sequences in FASTA/Q formats
Language:C1 0
AlexPersa7/shi7
Auto-parameterizing QC Pipeline for Illumina sequencing runs
Language:Python1 0
AlexPersa7/TBtools
GUI/CommandLine Tool Box for biologistists to utilize NGS data.
Language:Shell1 0