Issues
- 1
MRAN will be retired July 1, 2023
#481 opened by jaclyn-taroni - 0
Question about GSVA
#480 opened by dvenprasad - 3
Link to a notebook 404ing
#478 opened by dvenprasad - 1
DE doesn't perform p-value correction
#479 opened by dvenprasad - 0
- 2
- 0
- 4
New Analysis Section Idea: Patterns and Pitfalls
#374 opened by jashapiro - 2
User issue: Download for RNA-seq differential expression Rmd file is 404ing
#473 opened by jaclyn-taroni - 0
Cut a new release and add CITATION.cff
#470 opened by jaclyn-taroni - 7
Create Homepage for Refinebio Examples
#452 opened by jaclyn-taroni - 0
Footer.html can use more info and aesthetics help
#328 opened by cansavvy - 0
Navbar doesn't play well with sorta narrow windows
#376 opened by jashapiro - 0
GitHub Actions: Check URLs in refine.bio frontend and docs when merging to master
#449 opened by jaclyn-taroni - 3
Question about batch effects in refine.bio datasets
#455 opened by kengcher - 0
fix overflow text in code blocks
#453 opened by jashapiro - 2
CCDL_refinebio-examples-feedback form submission doesn't show up in #training-robots
#451 opened by jaclyn-taroni - 6
Remove rownames from printed tables
#428 opened by jashapiro - 0
- 0
- 4
- 1
Update Analysis: Add intro pathway analysis paragraph to microarray GSVA and review text in both GSVA examples
#371 opened by cansavvy - 2
Enforce code width limit
#406 opened by jashapiro - 1
The "Getting familiar with `clusterProfiler`'s options" section of ORA examples describes `msigdbr`
#415 opened by jaclyn-taroni - 4
Ortholog mapping notebook (temporarily?) won't render because of problem with HCOP data download
#439 opened by jaclyn-taroni - 3
Add introductory paragraphs to microarray GSEA example, review text for RNA-seq GSEA example
#354 opened by cbethell - 2
Find command line way of adding files to S3
#365 opened by cansavvy - 0
- 7
RNA-seq: Pathway Analysis - GSEA
#368 opened by cansavvy - 0
- 1
Write test script and pilot
#335 opened by dvenprasad - 9
RNA-seq: Pathway Analysis - GSVA
#369 opened by cansavvy - 1
Expand "Purpose of this Analysis"
#410 opened by jashapiro - 2
Control the width of output blocks
#399 opened by jashapiro - 1
Add message = FALSE to mute chatty blocks
#367 opened by jashapiro - 1
Check compatibility with magrittr 2.0
#370 opened by jashapiro - 14
New Analysis Example: RNA-seq Pathway analysis -- ORA
#344 opened by cansavvy - 1
ORA upset plot is not saved, only enrich plot 2x!
#393 opened by cansavvy - 2
Do a staging -> master merge after GSVA is in
#380 opened by cansavvy - 2
- 4
Update analysis example: Switch WGCNA dataset to something that doesn't have technical replicates
#373 opened by cansavvy - 4
Add a FAQ?
#375 opened by jashapiro - 0
- 7
[Investigation/Discussion] Methods/packages for identifying co-expressed gene modules
#346 opened by cansavvy - 5
New Analysis Example: Simpler example of gene clustering -- k-means for microarray
#351 opened by cansavvy - 5
- 4
The multiple pull request templates do not show up
#336 opened by cansavvy - 11
- 1
The refinebio-examples survey needs to be kept up to date with added examples
#332 opened by cansavvy - 1
Make a PR template for "hotfixes"
#331 opened by cansavvy