Pinned Repositories
ACE
Seminar materials for BCBB ACE Workshops
adenoMetagenTraining
APDC
Metagenomics analysis
azure_nextflow
Bacterial_NGS
Bacterial pathogens , virulence factors and phage associated with undiagnosed AFI.
bioinformatics
A collection of python code for various bioinformatics-related problems.
HIVseqDB
Webserver for storage [and analysis] of NGS-based HIVDR testing data
MNGS
Shotgun metagenome assembly and gene prediction
QuasiFlow
A Nextflow Pipeline for Analysis of NGS-based HIV Drug Resistance Data
super-infection
NGS-based HIV-1 super infection analysis
AlfredUg's Repositories
AlfredUg/QuasiFlow
A Nextflow Pipeline for Analysis of NGS-based HIV Drug Resistance Data
AlfredUg/MNGS
Shotgun metagenome assembly and gene prediction
AlfredUg/super-infection
NGS-based HIV-1 super infection analysis
AlfredUg/ACE
Seminar materials for BCBB ACE Workshops
AlfredUg/adenoMetagenTraining
AlfredUg/APDC
Metagenomics analysis
AlfredUg/azure_nextflow
AlfredUg/Bacterial_NGS
Bacterial pathogens , virulence factors and phage associated with undiagnosed AFI.
AlfredUg/HIVseqDB
Webserver for storage [and analysis] of NGS-based HIVDR testing data
AlfredUg/dailyRe-Data
daily SARS-CoV2 Re Values for select countries. See https://ibz-shiny.ethz.ch/covid-19-re/ for interactive visualisations.
AlfredUg/Deep-Learning-Papers-Reading-Roadmap
Deep Learning papers reading roadmap for anyone who are eager to learn this amazing tech!
AlfredUg/DeepPINK
DeepPINK: reproducible feature selection in deep neural networks
AlfredUg/dropout-feature-ranking
AlfredUg/DTU
AlfredUg/GUI
Basic graphical user interface in java (part 1)
AlfredUg/h3ameta
H3ABioNet Metagenomics Workflow
AlfredUg/HIV_DeepLearning
HIV Drug Resistance Prediction with Deep Learning
AlfredUg/hivseqdb-docker
Dockerized version of the HIVseqDB
AlfredUg/iva
de novo virus assembler of Illumina paired reads
AlfredUg/metagenomics-workshop
AlfredUg/MiCall-Lite
Pipeline for processing FASTQ data from an Illumina MiSeq for human RNA virus (HIV, hepatitis C virus) genotyping
AlfredUg/MLandHIVDR
ML-based detection of HIVDR
AlfredUg/myPhyloDB
myPhyloDB
AlfredUg/Nano-QuasiFlow
AlfredUg/ngs_hivdb
AlfredUg/oneliners
Useful bash one-liners for bioinformatics.
AlfredUg/PathogenGenomics2023
AlfredUg/RNAseq
AlfredUg/warp
WDL Analysis Research Pipelines
AlfredUg/wdl
Workflow Description Language - Specification and Implementations