BIAS Lab - Bioinformatics and Experimental Algorithms lab

Pinned Repositories

complexCGR
complex Chaos Game Representation for DNA sequences
Language:Python14 3 00
galig
A graph aligner
Language:Python27 8 1813
gppf
General Parsimony Phylogeny models from Frequencies
Language:Python2 6 11
HapCHAT
Adaptive haplotype assembly for efficiently leveraging high coverage in long reads
Language:C++12 6 57
LightStringGraph
Lightweight String Graph Construction
Language:C++11 11 11
malva
genotyping by Mapping-free ALternate-allele detection of known VAriants
Language:C10 8 84
pangeblocks
pangenome from maximal blocks in an MSA
Language:Jupyter Notebook11 4 11
PIntron
A novel pipeline for gene-structure prediction based on spliced alignment of transcript sequences (ESTs and mRNAs) against a genomic sequence
Language:C5 9 416
RecGraph
Optimal sequence-to-graph alignment with recombinations
Language:Rust25 7 72
shark
Mapping-free software for fishing relevant reads in an RNA-Seq sample
Language:C++18 5 01

BIAS Lab - Bioinformatics and Experimental Algorithms lab's Repositories

AlgoLab/galig
A graph aligner
Language:Python27 8 1813
AlgoLab/RecGraph
Optimal sequence-to-graph alignment with recombinations
Language:Rust25 7 72
AlgoLab/complexCGR
complex Chaos Game Representation for DNA sequences
Language:Python14 3 00
AlgoLab/LightStringGraph
Lightweight String Graph Construction
Language:C++11 11 11
AlgoLab/pangeblocks
pangenome from maximal blocks in an MSA
Language:Jupyter Notebook11 4 11
AlgoLab/malva
genotyping by Mapping-free ALternate-allele detection of known VAriants
Language:C10 8 84
AlgoLab/rs-vgaligner
Rust implementation of ekg's dozyg
Language:Rust9 8 00
AlgoLab/pantas
Differential quantification of alternative splicing events on spliced pangenome graphs
Language:Python7 7 0
AlgoLab/pygfa
A library to manage GFA files
Language:Python7 10 33
AlgoLab/CouGaR-g
Frequence Chaos Game Representation of DNA with Deep Learning
Language:Python3 3 04
AlgoLab/kfinger
A pipeline for computing overlaps between long reads based on theoretical properties of Lyndon factorizations.
Language:Python3 6 0
AlgoLab/cancer_ea
cancer phylogeny genetic programming
Language:Python2 10 02
AlgoLab/cpm2025
Combinatorial Pattern Matching 2025
Language:HTML2 6 0
AlgoLab/ESGq
Language:Python2 7 0
AlgoLab/MALVIRUS
A fast and accurate tool for genotyping haploid individuals (such as SARS-CoV-2)
Language:JavaScript2 9 172
AlgoLab/clib
Package manager for the C programming language.
1
AlgoLab/deap
Distributed Evolutionary Algorithms in Python
Language:Python1 7 0
AlgoLab/meta_cancer
Language:Jupyter Notebook1 8 0
AlgoLab/supervised-dna
Language:Jupyter Notebook1 3 0
AlgoLab/persistent-phylogeny
Language:C++0 9 02
AlgoLab/celluloid
Celluloid: clustering single cell sequencing data around centroids
Language:Python8 01
AlgoLab/COPA24
PhD school on Evolution in Computational Pangenomics
1 0
AlgoLab/MALVIRUS-data
Datasets accompanying MALVIRUS
Language:Python9 0
AlgoLab/MALVIRUS-repro
Reproducibility of MALVIRUS experiments
Language:C++8 0
AlgoLab/materiale-stage-tesi
Una raccolta di materiale utile per tutti gli studenti che iniziano a lavorare
Language:Rust6 0
AlgoLab/pangeblocks-experiments
Experiments to evaluate graph constructions made with pangeblocks and other tools
Language:Jupyter Notebook4 0
AlgoLab/Rearrangement-Distances
Rearrangement Distances journal paper
Language:TeX6 0
AlgoLab/RecGraph-exps
Language:Python6 0
AlgoLab/rs-gax
Language:Rust5 01
AlgoLab/Wild-pBWT
PBWT-based algorithm for identifying all Maximal Perfect Haplotype Blocks with Wildcards
Language:C++2 0