Pinned Repositories
2019-05-28-utexas
2020-08-13-utexas
University of Texas GitHub & Code Management Workshop, August 2020
bigsnpr
R package for the analysis of massive SNP arrays.
cdbn-home-away
Home field advantage in two domestication clades of common bean
CDBNgenomics
Genomics in the Cooperative Dry Bean Nursery
fourway-ionomics
Analysis and manuscript contributions for ionomics QTL in the switchgrass four-way cross.
PanicleData
SNP-calling-pipeline-GBS-ApeKI
SNP calling pipeline using GBS ApeKI data and cutadapt, sickle, bwa, and NGSEP.
snpdiver
Exploration of interacting SNP effects in phenotyped mapping populations.
switchgrassGWAS
Genome-wide association on the Panicum virgatum diversity panel.
Alice-MacQueen's Repositories
Alice-MacQueen/CDBNgenomics
Genomics in the Cooperative Dry Bean Nursery
Alice-MacQueen/SNP-calling-pipeline-GBS-ApeKI
SNP calling pipeline using GBS ApeKI data and cutadapt, sickle, bwa, and NGSEP.
Alice-MacQueen/2020-08-13-utexas
University of Texas GitHub & Code Management Workshop, August 2020
Alice-MacQueen/bigsnpr
R package for the analysis of massive SNP arrays.
Alice-MacQueen/cdbn-home-away
Home field advantage in two domestication clades of common bean
Alice-MacQueen/fourway-ionomics
Analysis and manuscript contributions for ionomics QTL in the switchgrass four-way cross.
Alice-MacQueen/PanicleData
Alice-MacQueen/switchgrassGWAS
Genome-wide association on the Panicum virgatum diversity panel.
Alice-MacQueen/2019-05-28-utexas
Alice-MacQueen/snpdiver
Exploration of interacting SNP effects in phenotyped mapping populations.
Alice-MacQueen/2019-08-19-utexas
Alice-MacQueen/2020-08-17-utexas-online
Quality Graphics with ggplot2
Alice-MacQueen/2021-08-16-utexas
Half-day workshop on using git and Github for code management at UT Austin, August 2021.
Alice-MacQueen/2021-08-17-utexas
Half day workshop on creating quality graphics with ggplot2, in RStudio.
Alice-MacQueen/Alice-MacQueen.github.io
Alice-MacQueen/farsr
Fatality Analysis Reporting System Data
Alice-MacQueen/gapit2mashr
Convert GAPIT output files to input data frames used by mashr.
Alice-MacQueen/github-and-code-management
Alice-MacQueen/manuscript-tutorial
Alice-MacQueen/pv-weather
Weather data for the Panicum virgatum common gardens & field sites.
Alice-MacQueen/pycounts_macqueen
Learn Python package structure
Alice-MacQueen/r-raster-vector-geospatial
Data Carpentry: Introduction to Geospatial Raster and Vector Data with R
Alice-MacQueen/Rpp8
Data and analyses associated with the Rpp8 diversity paper
Alice-MacQueen/USweather
Alice-MacQueen/workshop-template
The Carpentries Workshop Template