AlkaidWang

AlkaidWang's Stars

• rbundschuh/SMaSH

  A tool for sample swap identification in high throughput sequencing studies

  Language:Python104

• pfred/pfred-gui

  Repository for PFRED GUI codes

  Language:Java85

• BoevaLab/ONCOCNV

  ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data

  Language:R2512

• seqanswers/absCNseq

  AbsCN-seq: a statistical method to estimate tumor purity, ploidy and absolute copy numbers from next-generation sequencing data.

  Language:R76

• Sanniukin/absCopyNumber

  Estimate tumor purity, ploidy and absolute copy numbers from NGS (WGS, WES, Target Sequencing) and Microarray (SNP, aCGH etc.) data, based on absCNseq statistical method.

  4

• SunPengChuan/wgdi

  WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes

  Language:Python12923

• zhangwei2015/IMonitor

  This script use to analyze the immune repertoire sequenced by high throughtput sequencing

  2413

• KevinKuchinski/ProbeTools

  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa

  Language:Python222

• campanam/BaitsTools

  Software for hybridization capture bait design

  Language:Ruby114

• gmarcais/Jellyfish

  A fast multi-threaded k-mer counter

  Language:C++477137

• crazyhottommy/TCR-BCR-seq-analysis

  T/B cell receptor sequencing analysis notes

  21532

• rrwick/Bandage

  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

  Language:C++59398

• aquaskyline/SOAPdenovo2

  Next generation sequencing reads de novo assembler.

  Language:C22377

• mmcco/RepeatScout

  The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at http://bix.ucsd.edu/repeatscout/

  Language:C147

• Dfam-consortium/TETools

  Dfam Transposable Element Tools Docker container.

  Language:Perl8617

• BoutrosLaboratory/bamql

  Query language for filtering SAM/BAM reads

  Language:C++316

• genome/bam-readcount

  Count bases in BAM/CRAM files

  Language:CMake30996

• rambaut/figtree

  Automatically exported from code.google.com/p/figtree

  Language:Java403109

• stephaneguindon/phyml

  PhyML -- Phylogenetic estimation using (Maximum) Likelihood

  Language:C18061

• Stephane-S/Simplot_PlusPlus

  Language:Python316

• nextstrain/nextclade

  Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

  Language:Rust22161

• Ensembl/ensembl-vep

  The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

  Language:Perl457154

• binary-husky/gpt_academic

  为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, moss等。

  Language:Python66.6k8.2k

• lencx/ChatGPT

  🔮 ChatGPT Desktop Application (Mac, Windows and Linux)

  Language:Rust53.3k6k

• SACGF/variantgrid

  VariantGrid public repo

  Language:Python232

• cancervariants/metakb

  Central repository for the VICC metakb web application

  Language:Python154

• ohsu-comp-bio/g2p-aggregator

  Associations of genomic features, drugs and diseases

  Language:HTML4811

• kassambara/survminer

  Survival Analysis and Visualization

  Language:R512165

• bnr-ed/mworkflow

  Language:Python53

• ssadedin/bpipe

  Bpipe - a tool for running and managing bioinformatics pipelines

  Language:Groovy23357