AlkaidWang

AlkaidWang's Stars

• chemprop/chemprop

  Message Passing Neural Networks for Molecule Property Prediction

  Language:Python1.8k596

• ChrisWu1997/DeepCAD

  code for our ICCV 2021 paper "DeepCAD: A Deep Generative Network for Computer-Aided Design Models"

  Language:Python30863

• nicola-decao/MolGAN

  Tensorflow implementation of MolGAN: An implicit generative model for small molecular graphs

  Language:Python26286

• microsoft/evodiff

  Generation of protein sequences and evolutionary alignments via discrete diffusion models

  Language:Python54277

• TencentAI4S/HuDiff

  Code for humanization of antibody and nanobody

  Language:Python321

• ccdc-opensource/csd-python-api-scripts

  Example scripts using the CSD Python API

  Language:Jupyter Notebook6221

• SMU-CATCO/SmartCADD

  SmartCADD is an open-source virtual screening platform that combines deep learning, computer-aided drug design (CADD), and quantum mechanics methodologies within a user-friendly Python framework.

  Language:Python305

• ui-icts/sispotr-project

  With the siSPOTR tools you can: Identify candidate siRNA/shRNA sequences for your gene of interest with a low potential for off-targeting. Evaluate the off-targeting potential for any RNAi sequence. View a list of all predicted off-targets for siRNA candidates, along with information on the site-type composition and probability of being off-targeted. BLAST your sequence to search for siRNA-like on/off-targeting

  Language:HTML54

• XinhaoLi74/MolPMoFiT

  Language:Jupyter Notebook4521

• tsudalab/ChemTS

  Molecule Design using Monte Carlo Tree Search with Neural Rollout

  Language:Python16052

• MolecularAI/REINVENT4

  AI molecular design tool for de novo design, scaffold hopping, R-group replacement, linker design and molecule optimization.

  Language:Python38897

• ml4bio/RNA-FM

  Nature Methods: RNA foundation model (together with RhoFold)

  Language:Jupyter Notebook22524

• dauparas/ProteinMPNN

  Code for the ProteinMPNN paper

  Language:Jupyter Notebook1.1k316

• lulab/OligoFormer

  Language:Jupyter Notebook164

• renshuangxia/ResGitDR

  Using Somatic genome alterations (SGAs) and cancer type to predict drug response with the model named "ResGitDR"

  Language:Jupyter Notebook4

• CogStack/Foresight

  Deep Generative Modelling of Patient Timelines using Electronic Health Records

  Language:Jupyter Notebook548

• mizuno-group/GLDADec

  Guided LDA Deconvolution

  Language:Python32

• griffithlab/pVACtools

  Language:R14761

• LinearDesignSoftware/LinearDesign

  The LinearDesign mRNA design software.

  Language:C++16857

• opencobra/cobratoolbox

  The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

  Language:MATLAB254320

• diogocamacho/druid

  DRUg Indication Discoverer

  Language:R35

• dhimmel/indications

  Processing high-throughput drug indication resources.

  Language:HTML166

• bbrighttaer/ivpgan

  Integrated View Predictive GAN for Drug-Target Indication Prediction

  Language:Python94

• BioinformaticsCSU/BNNR

  BNNR is a novel computational method, which utilizes Bounded Nuclear Norm Regularization algorithm to identify potential novel indications for known or new drugs. The code in this package implements Bounded Nuclear Norm Regularization (BNNR) for drug repositioning, which is implemented in Matlab2014a.

  Language:MATLAB113

• TangSoftwareLab/DrugRepo

  A computational pipeline to repurpose drugs for new indications throughout ~0.8. million compounds across 646 diseases

  1

• broadinstitute/depmap_omics

  What you need to process the Quarterly DepMap-Omics releases from Terra

  Language:HTML11322

• RosettaCommons/DeepAb

  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.

  Language:Python15129

• Teichlab/bbknn

  Batch balanced KNN

  Language:Python15225

• yuuwill/1024app-android

  草榴官方客户端，小草客户端，Android

  6.2k1.1k

• icbi-lab/infercnvpy

  Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

  Language:Python14027