Amber-MD/pytraj

Several vulnerabilities in the C library which pytraj depends on. Could you help upgrade to patch versions?

JoeGardner000 opened this issue · 3 comments

Hi, @hainm , @swails , I'd like to report a vulnerability issue in pytraj_2.0.5.

Dependency Graph between Python and Shared Libraries

image

Issue Description

As shown in the above dependency graph (Here shows part of the dependency graph, which depends on vulnerable shared libraries), pytraj_2.0.5 directly or transitively depends on 35 C libraries (.so). However, I noticed that one C library is vulnerable, containing the following CVEs:
libidn-b9d21c09.so.11.5.19from C project libidn(version:1.28) exposed 3 vulnerabilities:
CVE-2015-8948, CVE-2016-6261, CVE-2016-6262

Suggested Vulnerability Patch Versions

libidn has fixed the vulnerabilities in versions >=1.33

Python build tools cannot report vulnerable C libraries, which may induce potential security issues to many downstream Python projects.
As a popular python package (pytraj has 5,580 downloads per month), could you please upgrade the above shared libraries to their patch versions?

Thanks for your help~
Best regards,
Joe Gardner

hainm commented

I have no idea what you are talking about and your account is quite new. So I close this issue.

CVEs are tracked vulnerabilities in commonly used software. Three of them affect shared libraries that pytraj currently links to/brings in (@JoeGardner000 I assume this is conda-forge? PyPI? What repository are you talking about?).

It would be best to rebuild the binary pytraj distribution to link to newer versions of the libraries (should just require minting a new build of pytraj and libcpptraj within conda).

@swails , thanks for your help.

I assume this is conda-forge? PyPI? What repository are you talking about?).

I download pytraj from PyPI repository.

Best regards,
Joe Gardner