/TreeConv

This Program takes bootstrap trees as input and generates a decision tree on the basis of unique bipartition's. The depth of tree tells us the convergence level of bootsrap run.

Primary LanguagePythonGNU General Public License v3.0GPL-3.0

TreeConv

This Program takes bootstrap trees as input and generates a descesion tree on the basis of unique bipartition matrix The depth of tree tells us the convergence level of bootsrap run.

Instructions

Run "Rscript Converg.R"

Number of attribute displayed in the tree is the total depth.

Description of the workflow was taken from paper "Grant Brammer and Tiffani L. Williams. Using Decision Trees to Study the Convergence of Phylogenetic Analyses. 2010 IEEE Symposium. DOI: 10.1109/CIBCB.2010.5510326"

http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=5510326&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D5510326

Pre-requisites: R "ape" library

This package is still under development phase