Pinned Repositories
aligner_benchmark
Anschutz_python
Beginner Python Course
AS-Quant
Quantitation and visualization of differential alternative splicing events
awesome-cheatsheets
📚 Awesome cheatsheets for popular programming languages, frameworks and development tools. They include everything you should know in one single file.
AWS-Machine-Learning-Scholarship-Program
This project focuses on best practices of object-oriented programming, AWS AI Services, AWS DeepLens, AWS DeepRacer, and AWS DeepComposer.
bioinfo-notebook
🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
Bioinformatics-Workshops
Workshops presented by the Gladstone Bioinformatics Core
biojupies
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
biotools
A list of useful bioinformatics resources
bisbee
alternative splicing analysis pipeline
Amhaslam's Repositories
Amhaslam/Anschutz_python
Beginner Python Course
Amhaslam/AS-Quant
Quantitation and visualization of differential alternative splicing events
Amhaslam/awesome-cheatsheets
📚 Awesome cheatsheets for popular programming languages, frameworks and development tools. They include everything you should know in one single file.
Amhaslam/AWS-Machine-Learning-Scholarship-Program
This project focuses on best practices of object-oriented programming, AWS AI Services, AWS DeepLens, AWS DeepRacer, and AWS DeepComposer.
Amhaslam/bioinfo-notebook
🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
Amhaslam/Bioinformatics-Workshops
Workshops presented by the Gladstone Bioinformatics Core
Amhaslam/biojupies
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
Amhaslam/biotools
A list of useful bioinformatics resources
Amhaslam/bisbee
alternative splicing analysis pipeline
Amhaslam/Cancer_notes
A continually expanding collection of cancer genomics notes and data
Amhaslam/cytoscape-tutorials
Collection of modular Cytoscape tutorials for online presentation using reveal.js
Amhaslam/GGR-cwl
CWL tools and workflows for GGR
Amhaslam/ikarus
Amhaslam/JTM-Rscript-ASsignatures
R script for manuscript "Exploration of predictive and prognostic alternative splicing signatures in lung adenocarcinoma using machine learning methods"
Amhaslam/learn-wdl
Educational materials for learning WDL
Amhaslam/MIBC-Predictive-models
This repository includes generated data and codes for paper: 'Predictive models of response to neoadjuvant chemotherapy in muscle-invasive bladder cancer based on nuclear morphology and tissue architecture'.'
Amhaslam/miniwdl
Workflow Description Language developer tools & local runner
Amhaslam/molmodsim-md-theory-lesson-novice
Some practical theoretic background needed for running MD simulations
Amhaslam/mountainClimber
Amhaslam/nextflow
A DSL for data-driven computational pipelines
Amhaslam/nextflow-tutorial
Nextflow training material for introductory tutorial
Amhaslam/pancanatlas_code_public
Public repository containing research code for the TCGA PanCanAtlas Splicing project
Amhaslam/PEGASAS
Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
Amhaslam/pinc
Prediction of lncRNAs based on RNA-sequencing data
Amhaslam/rmats-turbo
Amhaslam/s_app
Amhaslam/spladder
Tool for the detection and quantification of alternative splicing events from RNA-Seq data.
Amhaslam/sra-tools
SRA Tools
Amhaslam/Subread_to_DEXSeq
Scripts to import your FeatureCounts output into DEXSeq
Amhaslam/VolcaNoseR
Shiny app for making and annotating Volcano plots