RNA-Seq_course
Concepts and Main Aspects of RNA-Seq
- 25th, 28th and 29th April 2016
- Wellcome Trust Centre for Human Genetics, Seminar Rooms A/B
Main organizers
- Irina Pulyakhina
- Helen Lockstone
Teachers
- Paolo Piazza
- Helen Lockstone
- Irina Pulyakhina
- Davis McCarthy
- ...
Lectures
You can find lectures given during the course here:
- Introduction to NGS
- Experimental design
- Introduction to RNA-Seq
- Alignment
- Transcript quantification
- DE analysis and edgeR
- Pathway analysis
- Visualisation
- Splicing
- Cutting edge technologies
- Single cell sequencing
Data
Where to find the VMs:
Instructions on how to install the VM can be found here.
UCSC session for the second practical on visualisation can be found here.
Practicals:
- Irina's practical on alignment
- Irina's practical on UCSC
- Helen's and Davis's practical on differential gene expression
for GMS students
To get sequencing data that you generated during the NGS course in March, please contact Irina Pulyakhina (room 00-038, irina@well.ox.ac.uk).
Designed by Irina Pulyakhina, irina@well.ox.ac.uk