Pinned Repositories
15Gene-ccRCC
R code to generate 15Gene JCO PO paper figures
2018-August-Variant-Analysis-Workshop
From SNP and structural variant calling to GWAS.
2018_scWorkshop
2019-Alliance-for-Global-Health-and-Science-Makerere-University_Variants
2019 Alliance for Global Health and Science, Makerere University, Variant Analysis
2019-single-cell-RNA-sequencing-Workshop-UCD_UCSF
2019 single cell RNA sequencing Workshop @ UCD AND UCSF
2019-snakemake-Harvard-Informatics-nanocourse
Intro to workflows for efficient automated data analysis, using snakemake.
scRNA-seq_notes
A list of scRNA-seq analysis tools
scRNA-seq_online
scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
SLiPiR-seq
AmrR101's Repositories
AmrR101/hail
Scalable genomic data analysis.
AmrR101/single_cell_portal
Tutorials, workflows, and convenience scripts for Single Cell Portal
AmrR101/monocle3
AmrR101/OUTRIDER
OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
AmrR101/Intro-to-R-online-Catalyst
Contains materials for an online version of the Introduction to R
AmrR101/cytoscape-automation
Collection of scripts that include programmatic io and control of Cytoscape
AmrR101/rnabio.org
website for the rnaseq course
AmrR101/RNA-seq-analysis
RNAseq analysis notes from Ming Tang
AmrR101/2019_scWorkshop
Repo for Physalia course Analysis of Single Cell RNA-Seq data
AmrR101/rnaseq_tutorial_wiki
The wiki repo, with pull request enabled, for the rnaseq_tutorial
AmrR101/fraser-lab.github.io
Fraser Lab website
AmrR101/VariabilityGenetics2019
Analytical code used to determine protein expression variability QTLs
AmrR101/circlize
Circular visualization in R
AmrR101/leafcutter
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
AmrR101/IsoformSwitchAnalyzeR
An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
AmrR101/scRNA.seq.course
Analysis of single cell RNA-seq data course
AmrR101/RNAseq-ASHG19
RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows
AmrR101/blood_rnaseq_rare_disease_paper
AmrR101/dynmethods
A collection of 50+ trajectory inference methods within a common interface 📥📤
AmrR101/BiocWorkshops2019
The official repository of the Bioconductor 2019 Conference Workshops :confetti_ball:
AmrR101/2019-snakemake-Harvard-Informatics-nanocourse
Intro to workflows for efficient automated data analysis, using snakemake.
AmrR101/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
AmrR101/2019-Alliance-for-Global-Health-and-Science-Makerere-University_Variants
2019 Alliance for Global Health and Science, Makerere University, Variant Analysis
AmrR101/MelBioInf_docs
Melbourne Bioinformatics documentation in markdown format
AmrR101/altanalyze
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
AmrR101/MendelianRNA-seq-DB
Scripts to analyze splicing in RNAseq
AmrR101/EpiR
Introduction to R for Epi summer program
AmrR101/CNspector
Web-based copy number browser.
AmrR101/WASP
WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery
AmrR101/3D-Plotting-in-Seurat-3.0.0
This repository contains R code, with which you can create 3D tSNE plots of Seurat analyzed scRNAseq data