AndersJing

AndersJing's Stars

• xingshaocheng/architect-awesome

  后端架构师技术图谱

  59.9k3.2k7117.8k

• facebookresearch/fairseq

  Facebook AI Research Sequence-to-Sequence Toolkit written in Python.

  Language:Python30.7k4264.2k6.4k

• dmlc/dgl

  Python package built to ease deep learning on graph, on top of existing DL frameworks.

  Language:Python13.6k1772.8k3k

• yangyangwithgnu/use_vim_as_ide

  use vim as IDE

  Language:VimL9.2k604912.4k

• XPixelGroup/BasicSR

  Open Source Image and Video Restoration Toolbox for Super-resolution, Denoise, Deblurring, etc. Currently, it includes EDSR, RCAN, SRResNet, SRGAN, ESRGAN, EDVR, BasicVSR, SwinIR, ECBSR, etc. Also support StyleGAN2, DFDNet.

  Language:Python7k905681.2k

• guodongxiaren/README

  README文件语法解读，即Github Flavored Markdown语法介绍

  6.9k197697.2k

• MingchaoZhu/DeepLearning

  Python for《Deep Learning》，该书为《深度学习》(花书) 数学推导、原理剖析与源码级别代码实现

  Language:Python6.6k19361.3k

• facebookresearch/esm

  Evolutionary Scale Modeling (esm): Pretrained language models for proteins

  Language:Python3.3k65320659

• ondras/my-mind

  Online Mindmapping Software

  Language:TypeScript3.3k166152651

• fex-team/kityminder-editor

  Powerful Mindmap Editing Tool

  Language:JavaScript3.1k179996868

• RosettaCommons/RoseTTAFold

  This package contains deep learning models and related scripts for RoseTTAFold

  Language:Python2.1k59132442

• yangkky/Machine-learning-for-proteins

  Listing of papers about machine learning for proteins.

  1.6k150182207

• Peldom/papers_for_protein_design_using_DL

  List of papers about Proteins Design using Deep Learning

  1.5k1181182

• agemagician/ProtTrans

  ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

  Language:Jupyter Notebook1.1k32155155

• aqlaboratory/proteinnet

  Standardized data set for machine learning of protein structure

  Language:Python8745429132

• yangyutu/EssentialMath

  Language:Jupyter Notebook809476173

• noatpad/typora-theme-ursine

  A Typora theme, inspired by Bear

  Language:SCSS721135485

• soedinglab/hh-suite

  Remote protein homology detection suite.

  Language:C55225325136

• tatp22/linformer-pytorch

  My take on a practical implementation of Linformer for Pytorch.

  Language:Python409162037

• debbiemarkslab/EVcouplings

  Evolutionary couplings from protein and RNA sequence alignments

  Language:Jupyter Notebook2492518975

• tmpchem/computational_chemistry

  Files used in TMP Chem videos on computational chemistry

  Language:Python22118697

• ChatMol/ChatMol

  ChatMol

  Language:Python1655620

• lamoureux-lab/TorchProteinLibrary

  PyTorch library of layers acting on protein representations

  Language:C++117183023

• jonathanking/protein-transformer

  Predicting protein structure through sequence modeling

  Language:Jupyter Notebook1105417

• soedinglab/CCMpred

  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.

  Language:C107133527

• j3xugit/RaptorX-3DModeling

  Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will update this as soon as possible.

  Language:C10061127

• hiranumn/DeepAccNet

  Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.

  Language:Python803411

• j3xugit/RaptorX-Contact

  Deep residual neural network for protein contact/distance prediction developed by Xu group

  Language:Python778422

• John-Jumper/Upside-MD

  Coarse-grained molecular dynamics for protein physics

  Language:C++423111

• hiranumn/DeepAccNet-TF

  Python/TF1 implementation of DeepAccNet (https://www.biorxiv.org/content/10.1101/2020.07.17.209643v1)

  Language:Python10333