AndersenLab/NemaScan

Issues

• Add `Asses_Simulations` as NF-process

  #66 opened a year ago by mckeowr1
  1

• Rename Chromosome is a major rate limiting step in `prepare_simulations` process

  #64 opened a year ago by mckeowr1
  3

• Random process failure during simulations and mappings

  #59 opened a year ago by mckeowr1
  2

• Nextflow process cannot access orthogroup snp data stored in NemaScanDir

  #60 opened 2 years ago by mckeowr1
  0

• overview figure outdated

  #56 opened 2 years ago by tcrombie
  0

• default simulate_nqtl.csv missing

  #54 opened 2 years ago by mckeowr1
  2

• LD plot from report not written as a .png to output directory

  #53 opened 2 years ago by sam-widmayer
  0

• Collect simulation results, parameters and concatenate within pipeline

  #52 opened 2 years ago by sam-widmayer
  0

• simulated causal variants are chosen from filtered VCF

  #51 opened 2 years ago by sam-widmayer
  0

• Organize input file structure (VCF, trait data, GFF/GTF/CSQ)

  #1 opened 2 years ago by synmuv
  1

• plotting fails with dplyr < 1.0.0

  #12 opened 2 years ago by tcrombie
  0

• Provide simulated data to test arms vs. centers, small vs. large effects, simple vs. complex architectures

  #3 opened 3 years ago by synmuv
  1

• NemaScan has been running job since Wednesday

  #36 opened 3 years ago by jb621-star
  1

• MAF cutoff for vcf_to_geno_matrix process

  #24 opened 3 years ago by tcrombie
  1

• Implement GCTA for mapping algorithms

  #2 opened 4 years ago by synmuv
  0