Pinned Repositories
CNMF_E
Constrained Nonnegative Matrix Factorization for microEndoscopic data
constrained-foopsi
Implementation of the constrained deconvolution spike inference algorithm in Matlab
OASIS_matlab
Suite2P
Tools for processing 2P recordings
Toolbox-Romano-et-al
Computational toolbox for analysis of calcium imaging data of neuronal populations
CaImAn-MATLAB
Complete Matlab pipeline for large scale calcium imaging data analysis
CellSort
This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and validation of the method is provided in the paper, "Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data," Neuron, 63:747 (2009): http://tinyurl.com/cellsort
CMTK_matlab_wrapper
Matlab functions to interphase with CMTK toolbox
coding-problems
Solutions for various coding/algorithmic problems and many useful resources for learning algorithms and data structures
FlyCaImAn
Calcium Imaging Processing Pipeline of 3D time series
AndreFaiscaMarques's Repositories
AndreFaiscaMarques/git-tutorial
Workshop at CCU for learning git
AndreFaiscaMarques/Python-programming-exercises
100+ Python challenging programming exercises
AndreFaiscaMarques/CMTK_matlab_wrapper
Matlab functions to interphase with CMTK toolbox
AndreFaiscaMarques/coding-problems
Solutions for various coding/algorithmic problems and many useful resources for learning algorithms and data structures
AndreFaiscaMarques/interactive-coding-challenges
120+ interactive Python coding interview challenges (algorithms and data structures). Includes Anki flashcards.
AndreFaiscaMarques/FlyCaImAn
Calcium Imaging Processing Pipeline of 3D time series
AndreFaiscaMarques/python-interview-questions
300+ Python Interview Questions
AndreFaiscaMarques/notBoxPlot
plots things that are not boxplots
AndreFaiscaMarques/CaImAn-MATLAB
Complete Matlab pipeline for large scale calcium imaging data analysis
AndreFaiscaMarques/neuroGLM
Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).
AndreFaiscaMarques/NoRMCorre
Matlab routines for online non-rigid motion correction of calcium imaging data
AndreFaiscaMarques/unicorn-index
Introducing a new way to define player uniqueness
AndreFaiscaMarques/Suite2P
Tools for processing 2P recordings
AndreFaiscaMarques/CNMF_E
Constrained Nonnegative Matrix Factorization for microEndoscopic data
AndreFaiscaMarques/OASIS_matlab
AndreFaiscaMarques/CellSort
This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and validation of the method is provided in the paper, "Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data," Neuron, 63:747 (2009): http://tinyurl.com/cellsort
AndreFaiscaMarques/OASIS
Deconvolution of calcium imaging data
AndreFaiscaMarques/Toolbox-Romano-et-al
Computational toolbox for analysis of calcium imaging data of neuronal populations
AndreFaiscaMarques/Neural_Decoding
A python package that includes many methods for decoding neural activity
AndreFaiscaMarques/test-website
Test website creation at 2017 Students' Retreat
AndreFaiscaMarques/constrained-foopsi
Implementation of the constrained deconvolution spike inference algorithm in Matlab