AndreaMariani-AM
Currently PhD student in Systems Biology @ European School of Molecular Medicine (SEMM), working on Epigenetics, Genomics and Transcriptomics
European School of Molecular MedicineMilan, Italy
Pinned Repositories
AndreaMariani-AM
AndreaMariani-AM.github.io
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
BI-BE-CS-183-2023
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
bookdown-mlbiostatistics
ChIPseq_snakemake
ChIPseq pipeline for Pasini's lab written in snakemake
combinatorial_indexing
Collection of some functions for combinatorial indexing experiments
CutNtag_snakemake
CutNtag pipeline for Pasini's lab written in snakemake
Docker
This repo contains github actions to build various Docker Images
Unsupervised_clustering_eval
Some functions to evaluate Unsupervised Clustering for Single Cell RNAseq
AndreaMariani-AM's Repositories
AndreaMariani-AM/Docker
This repo contains github actions to build various Docker Images
AndreaMariani-AM/Unsupervised_clustering_eval
Some functions to evaluate Unsupervised Clustering for Single Cell RNAseq
AndreaMariani-AM/AndreaMariani-AM
AndreaMariani-AM/AndreaMariani-AM.github.io
AndreaMariani-AM/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
AndreaMariani-AM/BI-BE-CS-183-2023
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
AndreaMariani-AM/bookdown-mlbiostatistics
AndreaMariani-AM/ChIPseq_snakemake
ChIPseq pipeline for Pasini's lab written in snakemake
AndreaMariani-AM/combinatorial_indexing
Collection of some functions for combinatorial indexing experiments
AndreaMariani-AM/CutNtag_snakemake
CutNtag pipeline for Pasini's lab written in snakemake
AndreaMariani-AM/hic
Analysis of Chromosome Conformation Capture data (Hi-C)
AndreaMariani-AM/New_pc_setup
This repo contains links and a tutorial on how to set up a new machine with all the tools i need + customizations
AndreaMariani-AM/PhD_notes
Collection of notes of my PhD done with Obsidian
AndreaMariani-AM/RNAseq_snakemake
RNAseq pipeline for Pasini's lab written in snakemake
AndreaMariani-AM/Denosing_ChIPseq
This repo contains different architectures for Denoising ChIPseq experiments
AndreaMariani-AM/DPLabR
AndreaMariani-AM/Kind-PyTorch-Tutorial
Kind PyTorch Tutorial for beginners
AndreaMariani-AM/openproblems
Formalizing and benchmarking open problems in single-cell genomics
AndreaMariani-AM/test_HPC_rnaseq
This repo contains a shorter version of an RNAseq pipeline. It'll be used to test HPC resources