AndrewGYork
I'm a physicist; I develop new microscopy techniques. See the link below for a list of publications. Gmail: andrew.g.york
@calicoSan Francisco
Pinned Repositories
adaptive_interference_inference
A mathematical optimization problem, inspired by an apparent paradox in the physics of optical measurement. Read the micro-publication here: https://andrewgyork.github.io/adaptive_interference_inference
gfp_magnetofluorescence
A scientific publication that describes a simple, nontoxic, biocompatible way to control the brightness of fluorescent proteins via modest magnetic fields (~10 mT).
high_na_single_objective_lightsheet
Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/high_na_single_objective_lightsheet
mScarlet_lifetime_reports_pH
A scientific publication describing the use of mScarlet fluorescence lifetime to quantify lysosomal pH.
publication_template
A template for writing scientific papers. View it in action here: https://andrewgyork.github.io/publication_template/
relaxation_sensors
A scientific publication that describes a new approach for quantitative readout of fluorescent biosensors, based on spontaneous isomerization rates. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/relaxation_sensors
remote_refocus
A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/remote_refocus/
simple_sim_fusion_demo
Simple demo of structured illumination microscopy image fusion via Richardson-Lucy deconvolution
stimulated_emission_imaging
A scientific publication that describes experiments to explore whether stimulated emission from a pointlike emitter is distinguishable from the stimulating beam. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/stimulated_emission_imaging
tools
Things we use regularly
AndrewGYork's Repositories
AndrewGYork/publication_template
A template for writing scientific papers. View it in action here: https://andrewgyork.github.io/publication_template/
AndrewGYork/tools
Things we use regularly
AndrewGYork/high_na_single_objective_lightsheet
Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/high_na_single_objective_lightsheet
AndrewGYork/simple_sim_fusion_demo
Simple demo of structured illumination microscopy image fusion via Richardson-Lucy deconvolution
AndrewGYork/gfp_magnetofluorescence
A scientific publication that describes a simple, nontoxic, biocompatible way to control the brightness of fluorescent proteins via modest magnetic fields (~10 mT).
AndrewGYork/remote_refocus
A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/remote_refocus/
AndrewGYork/adaptive_interference_inference
A mathematical optimization problem, inspired by an apparent paradox in the physics of optical measurement. Read the micro-publication here: https://andrewgyork.github.io/adaptive_interference_inference
AndrewGYork/relaxation_sensors
A scientific publication that describes a new approach for quantitative readout of fluorescent biosensors, based on spontaneous isomerization rates. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/relaxation_sensors
AndrewGYork/stimulated_emission_imaging
A scientific publication that describes experiments to explore whether stimulated emission from a pointlike emitter is distinguishable from the stimulating beam. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/stimulated_emission_imaging
AndrewGYork/iterative-fusion
Automatically exported from code.google.com/p/iterative-fusion
AndrewGYork/rescan_line_sted
A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/rescan_line_sted
AndrewGYork/tumbling_is_general
A scientific publication that describes new approaches to measuring protein-protein interactions via molecular tumbling. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/tumbling_is_general/
AndrewGYork/annotation_buddy
AndrewGYork/moire-sim-demo
Some brief blurbs about a structured illumination microscopy demo
AndrewGYork/msim
Automatically exported from code.google.com/p/msim
AndrewGYork/picoquant_spike_question
AndrewGYork/snoutscope
AndrewGYork/split_wrmscarlet
A scientific publication that describes a new red fluorophore, along with a set of strains, reagents and protocols, to make it faster and easier to label endogenous C. elegans proteins with fluorescent tags. Read the publication here: https://andrewgyork.github.io/split_wrmscarlet
AndrewGYork/mScarlet_lifetime_reports_pH
A scientific publication describing the use of mScarlet fluorescence lifetime to quantify lysosomal pH.
AndrewGYork/cpython
The Python programming language
AndrewGYork/palm3d
Automatically exported from code.google.com/p/palm3d
AndrewGYork/ps_decomp
Periodic plus smooth image decomposition, as described by Moisan (http://www.math-info.univ-paris5.fr/~moisan/papers/2009-11r.pdf)
AndrewGYork/publication_template_data
See https://andrewgyork.github.io/publication_template/ for details
AndrewGYork/remote_refocus_data
See https://andrewgyork.github.io/remote_refocus/ for details
AndrewGYork/rescan_line_sted_data
See https://andrewgyork.github.io/rescan_line_sted/ for details
AndrewGYork/tutorials
tutorials for the napari image viewer