This repository contains additional documents to my Master 2 thesis.
Four R scripts are available:
-- datasetFiltering.R # contains all the steps I followed to clean the eukaryotic metabarcoding data set
-- nmds.R # contains the R code for performing nmds
-- anosim.R # contains the R code for performing anosim
-- wgcna.R # contains the R code to perform all wgcna steps on the eukaryotic metabarcoding data set
Additional figures and tables:
-- moduleCompositionHighVip.ods # contains the composition in high VIP eukaryotic lineages of each module
-- oligoTestOutliersModuleTraitRelationships.pdf # module - environmental parameters correlation matrix when including upwelling samples
-- oligoTestOutliersGSvsMM.pdf # modules' structure correlation to carbon export when including upwelling samples
-- oligoSampleClusteringAndTraitHeatmap.pdf # dendrogram of oligotrophic samples and trait heatmap of each sample