AntetokounmJie

AntetokounmJie's Stars

• vgteam/vg

  tools for working with genome variation graphs

  Language:C++1.1k194

• davidemms/OrthoFinder

  Phylogenetic orthology inference for comparative genomics

  Language:Python684186

• HirschLabUMN/Split_genes

  Language:Shell82

• schneebergerlab/plotsr

  Tool to plot synteny and structural rearrangements between genomes

  Language:Python27728

• mkirsche/Jasmine

  Jasmine: SV Merging Across Samples

  Language:Java17816

• schatzlab/genomescope

  Fast genome analysis from unassembled short reads

  Language:JavaScript25056

• benjaminpatrickevans/harmonicmeanp

  The harmonic mean p-value for combining dependent tests

  Language:Python3

• gmarcais/Jellyfish

  A fast multi-threaded k-mer counter

  Language:C++462136

• metagenlab/mummer2circos

  Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments

  Language:Python9724

• eswlab/orphan-prediction

  methods for orphan gene prediction paper optimization

  Language:Shell2511

• st707311g/RSAtrace3D

  Language:Python2

• Nucleomics-VIB/bionano-tools

  Custom tools to 'facilitate' BioNano Genomics data analysis

  Language:Perl336

• Computational-Plant-Science/DIRT

  Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.

  Language:Python2317

• zyndagj/BSMAPz

  Updated and optimized fork of BSMAP

  Language:C206

• qiao-xin/Scripts_for_GB

  The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".

  Language:Perl2822

• qiao-xin/DupGen_finder

  A pipeline used to identify different modes of duplicated gene pairs

  Language:C++9029

• ShiLab-Bioinformatics/subread

  The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program.

  Language:C306

• edgardomortiz/vcf2phylip

  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

  Language:Python28685

• deeptools/HiCBrowser

  Simple web browser to visualize HiC tracks

  Language:JavaScript185

• deeptools/pyGenomeTracks

  python module to plot beautiful and highly customizable genome browser tracks

  Language:Python756111

• RPCS3/rpcs3

  PS3 emulator/debugger

  Language:C++15.2k1.9k

• xukaili/GFF2Gene_structure.pl

  Draw the Gene structure based on the GFF and gene's ID

  Language:Perl104

• vcftools/vcftools

  A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.

  Language:C++497149

• YinLiLin/CMplot

  📊 Circular and Rectangular Manhattan Plot

  Language:R514112

• htseq/htseq

  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.

  Language:Python9031

• karakatic/statutils

  Python utils for statistics, mainly inspired by R packages.

  Language:Python3

• brentp/vcfanno

  annotate a VCF with other VCFs/BEDs/tabixed files

  Language:Go35956

• iptv-org/iptv

  Collection of publicly available IPTV channels from all over the world

  Language:JavaScript84.6k2.5k

• Edinburgh-Genome-Foundry/DnaFeaturesViewer

  :eye: Python library to plot DNA sequence features (e.g. from Genbank files)

  Language:Python58691

• jacotton/Nucmer2Circos

  perl script to create input files for circos from nucmer or promer output

  Language:Perl11