/fitness_score

matlab code for the import, filtering, normalization, and scoring of colony array image quantification results

Primary LanguageMATLABGNU General Public License v2.0GPL-2.0

README

What is this repository for?

  • This repository holds the scripts necessary to analyze arrayed colonies of the KEIO, RNAP1, and RNAP2 mutant libraries from the Carol Gross Lab.

  • The article referencing this code is available on Pubmed Central, PMC4927156

  • other published data analyses that have utilized this code to analyze colony size: PMID| 27238023, ...

  • This code is a modification of, and relies heavily on, the EMAP Toolbox from Sean Collins, PMC1779568 See also https://sourceforge.net/projects/emap-toolbox/files/ Files from the original EMAP Toolbox are included within the distribution and authorship of particular .m files is available by accessing the help comments on the file.

*TO DO: Write detailed summary of set up and execution

How do I get set up?

  • Summary of set up
  • Configuration
  • Dependencies MATLAB 2010a or later
  • Database configuration No database configurations
  • How to run tests
  • Deployment instructions

Contribution guidelines

  • Writing tests
  • Code review
  • Other guidelines

Who do I talk to?