/CellCounter

A machinelearning-based automated cell counting tool requiring only one image for training

Primary LanguagePythonGNU General Public License v3.0GPL-3.0

AICellCounter

A machine learning-based automated cell counting tool requiring only one image for training

Download the tool, unzip it, and use it

Baidu 百度网盘 password: 2333

OneDrive password: 2333

Project background

An automated tool to identify the target cells in fluorescent images.

For a cell image with three channels: RGB.

In the following example, red channel is cytoskeleton labeled by GFAP; green channel represents the whole astrocyte labeled by EGFP; blue channel is nucleus.

The target cells can be identified by one of the channel or the combination of them.

Users input a manually labeled image and AICellCounter can learn how to identify the target cells in similar images.

Contact

If you have any problems, please contact me with email: wangad@connect.hku.hk.