AppertaFoundation/IOLMasterImport

Part of OpenEyes: JAVA code for importing IOL Master device binary files. This is the Gold Master "Community Edition" release. Please note that this could be up to 6 months behind the latest development tip. If you are interested in being involved with latest developments, please speak to the OpenEyes Foundation or the Apperta Foundation.

IOLMasterImport

JAVA code for importing IOL Master device binary files

Compilation

To compile you'll need JDK version 1.7 or higher.

Compile (under Linux):

ant -f /root/IOLMasterImport/ -Dnb.internal.action.name=rebuild clean jar

Execution

Run this command to see the latest help text:

java -cp ./lib/fontbox-2.0.0-RC3.jar:./lib/pdfbox-2.0.0-RC3.jar:./lib/antlr-2.7.7.jar:./lib/dcm4che-core-3.3.7.jar:./lib/dom4j-1.6.1.jar:./lib/geronimo-jta_1.1_spec-1.1.1.jar:./lib/hibernate-commons-annotations-5.0.0.Final.jar:./lib/hibernate-core-5.0.0.Final.jar:./lib/hibernate-jpa-2.1-api-1.0.0.Final.jar:./lib/jandex-1.2.2.Final.jar:./lib/javassist-3.18.1-GA.jar:./lib/jboss-logging-3.3.0.Final.jar:./lib/slf4j-api-1.7.5.jar:./lib/slf4j-log4j12-1.7.5.jar:./lib/mysql-connector-java-5.1.23-bin.jar:./lib/json-simple-1.1.1.jar:./lib/commons-cli-1.3.1.jar:./lib/jaxen-1.1.6.jar:./lib/log4j-1.2.17.jar:./lib/ini4j-0.5.4.jar:./lib/httpclient/commons-codec-1.9.jar:./lib/httpclient/commons-logging-1.2.jar:./lib/httpclient/fluent-hc-4.5.1.jar:./lib/httpclient/httpclient-4.5.1.jar:./lib/httpclient/httpclient-cache-4.5.1.jar:./lib/httpclient/httpclient-win-4.5.1.jar:./lib/httpclient/httpcore-4.4.3.jar:./lib/httpclient/httpmime-4.5.1.jar:./lib/httpclient/jna-4.1.0.jar:./lib/httpclient/jna-platform-4.1.0.jar:./OE_IOLMasterImport.jar uk.org.openeyes.OE_IOLMasterImport -h

Patient hospital number matching

By default the patient hospital number on the incoming DICOM file is padded to seven digits with leading zeros, and then compared to the patient.hos_num column in the database (along with gender and date of birth).

Two parameters may be used to override the default behaviour.

First, specify -r or --hosnumregex with a Java regex to capture the digits from the hospital number. If a second capturing group is found this is the result, otherwise the first capturing group is used. For example, this would get digits after stripping off any "ABC" prefix:

-r "(?i)(ABC)?(\\d+)"

Secondly, specify -p or --hosnumpad with a format specification (Java String.format) that accepts an integer. For example, this would start with "ABC" and then pad the integer to eight digits with leading zeros:

-p "ABC%08d"

So using the above together, a file containing hospital number "abc123" would attempt to match the database for "ABC00000123".

Note that specifying -r EXACT forces an exact match of hospital number, switching off the previous default padding as noted above.