Pinned Repositories
B_oleracea_R_genes_supplementary
This repository contains scripts used to generate the plots and results of the B. oleracea R-genes paper
Basics-of-Bash
BioNanoAnalyst
BioNanoAnalyst is a tool providing GUI to assess the genome assembly quality using BioNano data.
Brassica_oleracea_rapa_napus_code
Code for the Brassica oleracea/rapa/napus genomic comparison
gene-daisychain
A web server linking genome annotations. Aimed at researchers working on single genes that want to know what the homolog in other published assemblies is.
lncRNA_Prediction_Interpretation
Notebooks, Data and Scripts for lncRNA Prediction & Interpretation
maize_early_yield_prediction
Repository with the code for predicting the yield of crop varieties using deep learning and early phenotype data.
pan_genome_scripts
Python scripts for constructing pangenomes using the iterative mapping style for the Bioinformatics Methods chapter: Making a Pan genome using the iterative mapping approach
RefKA
A fast and efficient long-read genome assembly approach for large and complex genomes
runBNG
An easy way to run BioNano genomic analysis
AppliedBioinformatics's Repositories
AppliedBioinformatics/runBNG
An easy way to run BioNano genomic analysis
AppliedBioinformatics/Brassica_oleracea_rapa_napus_code
Code for the Brassica oleracea/rapa/napus genomic comparison
AppliedBioinformatics/BioNanoAnalyst
BioNanoAnalyst is a tool providing GUI to assess the genome assembly quality using BioNano data.
AppliedBioinformatics/B_oleracea_R_genes_supplementary
This repository contains scripts used to generate the plots and results of the B. oleracea R-genes paper
AppliedBioinformatics/pan_genome_scripts
Python scripts for constructing pangenomes using the iterative mapping style for the Bioinformatics Methods chapter: Making a Pan genome using the iterative mapping approach
AppliedBioinformatics/gene-daisychain
A web server linking genome annotations. Aimed at researchers working on single genes that want to know what the homolog in other published assemblies is.
AppliedBioinformatics/RefKA
A fast and efficient long-read genome assembly approach for large and complex genomes
AppliedBioinformatics/pangenome
Python scripts designed to perform tasks associated with the pangenome construction method of iterative mapping and assembly
AppliedBioinformatics/DiffKAP
A Differential k-mer Analysis Pipeline
AppliedBioinformatics/PAV_table_scripts
Python scripts for constructing PAV tables for the Bioinformatics Methods chapter: Creating a Gene Presence/Absence Table using Mosdepth.
AppliedBioinformatics/Basics-of-Bash
AppliedBioinformatics/lncRNA_Prediction_Interpretation
Notebooks, Data and Scripts for lncRNA Prediction & Interpretation
AppliedBioinformatics/maize_early_yield_prediction
Repository with the code for predicting the yield of crop varieties using deep learning and early phenotype data.
AppliedBioinformatics/BioNanoScripts
Scripts used for BioNano analysis
AppliedBioinformatics/H_ovalis_supplementary
AppliedBioinformatics/legume_gene_count
AppliedBioinformatics/Truegene