Araport

The Arabidopsis Information Portal

JCVI :: TACC :: Cambridge

Pinned Repositories

adama
Adaptible Data And Microservices API
Language:JavaScript6 13 993
adamalib
A Python library for using Adama
Language:Jupyter Notebook3 10 03
agave-ncbi-blast
Agave and Docker build files for the back end of our BLAST app
Language:Shell0 9 11
ComboTrackSelector
Plugin to allow the co-existence of the Hierarchical and Faceted Track Selectors in the GMOD JBrowse Genome Browser
Language:JavaScript7 7 44
generator-aip-science-app
Yeoman Generator for building Science Apps for the Arabidopsis Information Portal.
Language:JavaScript2 8 52
intermine
This is the code base for Thalemine, a data warehouse system based on InterMine and used in Araport, the Arabidopsis Information Portal.
Language:Java4 16 02
jbrowse
A modern genome browser built with JavaScript and HTML5.
Language:JavaScript2 6 03
jbrowse-contrib
Configuration and miscellaneous support files for Araport JBrowse installation
Language:Shell3 8 03
science_apps_workspace
Drupal module for the Araport Science Apps Workspace.
Language:PHP1 12 161
SeqLighter
BioJS based Sequence Viewer plugin for the GMOD JBrowse genome browser
Language:JavaScript4 8 40

Araport's Repositories

Arabidopsis-Information-Portal/ComboTrackSelector
Plugin to allow the co-existence of the Hierarchical and Faceted Track Selectors in the GMOD JBrowse Genome Browser
Language:JavaScript7 7 44
Arabidopsis-Information-Portal/adama
Adaptible Data And Microservices API
Language:JavaScript6 13 993
Arabidopsis-Information-Portal/intermine
This is the code base for Thalemine, a data warehouse system based on InterMine and used in Araport, the Arabidopsis Information Portal.
Language:Java4 16 02
Arabidopsis-Information-Portal/adamalib
A Python library for using Adama
Language:Jupyter Notebook3 10 03
Arabidopsis-Information-Portal/jbrowse-contrib
Configuration and miscellaneous support files for Araport JBrowse installation
Language:Shell3 8 03
Arabidopsis-Information-Portal/generator-aip-science-app
Yeoman Generator for building Science Apps for the Arabidopsis Information Portal.
Language:JavaScript2 8 52
Arabidopsis-Information-Portal/jbrowse
A modern genome browser built with JavaScript and HTML5.
Language:JavaScript2 6 03
Arabidopsis-Information-Portal/jbrowse-tabix-howto
Visualizing tabix-indexed files located on the CyVerse Data Store using the JBrowse Genome Browser
2 3 0
Arabidopsis-Information-Portal/CyverseRemoteTracks
JBrowse plugin enabling the ability to dynamically load tracks from data/configurations stored in the Cyverse Data Store
Language:JavaScript1 6 0
Arabidopsis-Information-Portal/phytozome_webservices
ADAMA adapters for various Phytozome webservices
1 1 0
Arabidopsis-Information-Portal/PMR_API
Adapter for PMR web services.
Language:Python1 13 0
Arabidopsis-Information-Portal/science_apps_workspace
Drupal module for the Araport Science Apps Workspace.
Language:PHP1 12 161
Arabidopsis-Information-Portal/thalemine
ThaleMine - an InterMine with Arabidopsis genomic data
Language:Java0 5 00
Arabidopsis-Information-Portal/1001GenomesVariants
JBrowse plugin enabling the ability to enrich the 1001 Genomes Variants track with metadata from 1001genomes.org Master Accession List API
Language:JavaScript6 0
Arabidopsis-Information-Portal/araport-portal
Docker image for the Araport portal.
Language:PHP6 0
Arabidopsis-Information-Portal/araport-theme
Arabadopsis Information Portal Theme, a Bootstrap 3 theme based on http://drupal.org/project/bootstrap.
Language:CSS11 0
Arabidopsis-Information-Portal/araport_features
Drupal modules developed for Araport functionality.
Language:PHP10 0
Arabidopsis-Information-Portal/AraportJBPlugin
Custom JBrowse plugin to map JBrowse/Store/SeqFeature/REST to the Araport Adama API endpoints
Language:JavaScript6 0
Arabidopsis-Information-Portal/atted-displayer
Language:JavaScript16 11
Arabidopsis-Information-Portal/atted_webservices
Illustrative web service for ATTED II coexpression web service
Language:Python5 05
Arabidopsis-Information-Portal/CDN
JavaScript, Cascading Style Sheet Content Delivery Network
Language:JavaScript16 0
Arabidopsis-Information-Portal/deploy-community-tracks
Language:Shell6 4
Arabidopsis-Information-Portal/ebi-interaction-viewer-app
Araport demo science app that uses the ADAMA layer to query interaction data from EBI
Language:JavaScript11 0
Arabidopsis-Information-Portal/EnsemblVariants
JBrowse plugin enabling the ability to enrich the Ensembl Variants (VCF) track with metadata from rest.ensemblgenomes.org API
Language:JavaScript6 0
Arabidopsis-Information-Portal/GAG
Generates an NCBI .tbl file of annotations on a genome.
Language:Python7 0
Arabidopsis-Information-Portal/intermine-scripts
All scripts that used to be in the main intermine repository in bio/scripts and intermine/scripts
Language:PLpgSQL5 01
Arabidopsis-Information-Portal/jcvi-araport11-services
ADAMA adapters for querying Araport11 annotation data
Language:Python11 01
Arabidopsis-Information-Portal/small_orfs_to_jbrowse
ADAMA web-service wrapper to transform "Translated small ORFs" GFF3 data (Hsu et al. 2016) into JBrowse compatible JSON
Language:Python5 0
Arabidopsis-Information-Portal/thalemine-bio-sources
Data Sources for ThaleMine - an InterMine with Arabidopsis genomic data
Language:Java5 01
Arabidopsis-Information-Portal/tree-viewer-app
Viewer app for rendering phylogenetic trees.
Language:JavaScript14 0