/nii.gz_2_h5

Script for transferring nii.gz CT images to h5 file.

Primary LanguagePython

nii.gz_2_h5

Script for transferring nii.gz CT images to h5 file.

0. Installation

pip install -r requirements.txt

1. Transfer

datapath=/ccvl/net/ccvl15/zzhou82/PublicAbdominalData/05_KiTS
savepath=/ccvl/net/ccvl15/ylai45/ccvl14/h5

# Convert nii.gz to h5
python niigz2h5.py --datapath $datapath --savepath $savepath

# Convert h5 to nii.gz
python h52niigz.py --datapath $datapath --savepath $savepath