Pinned Repositories
astarix
AStarix: Fast and Optimal Sequence-to-Graph Aligner
bam_stats
basevar
Call variants for ultra low-pass WGS data.
BFCounter
bwt
String search using the Burrows-Wheeler transform
fastx
Ultrafast FASTA/FASTQ manipulating tool for both single-end and paired-end sequences
goatools
Python scripts to find enrichment of GO terms
inScan
Region based insertion detection from long reads
pyBST
python implement of naive binary search tree and red-black tree
SVAN
A Structure Variantion Annotation Tool
Archieyoung's Repositories
Archieyoung/bam_stats
Archieyoung/SVAN
A Structure Variantion Annotation Tool
Archieyoung/fastx
Ultrafast FASTA/FASTQ manipulating tool for both single-end and paired-end sequences
Archieyoung/astarix
AStarix: Fast and Optimal Sequence-to-Graph Aligner
Archieyoung/basevar
Call variants for ultra low-pass WGS data.
Archieyoung/cgranges
A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)
Archieyoung/colord
A versatile compressor of third generation sequencing reads.
Archieyoung/Complete-Striped-Smith-Waterman-Library
Archieyoung/CppCoreGuidelines
The C++ Core Guidelines are a set of tried-and-true guidelines, rules, and best practices about coding in C++
Archieyoung/DRAGMAP
DRAGEN open-source mapper
Archieyoung/dragonstar2019
Archieyoung/frp
A fast reverse proxy to help you expose a local server behind a NAT or firewall to the internet.
Archieyoung/gatk
Official code repository for GATK versions 4 and up
Archieyoung/GKL
Accelerated kernel library for genomics
Archieyoung/gssw
efficient alignment of strings to partially ordered string graphs
Archieyoung/hapdiff
SV calling for diploid assemblies
Archieyoung/hapdup
Pipeline to convert a haploid assembly into diploid
Archieyoung/minisv
Lightweight mosaic/somatic SV caller for long reads (WIP)
Archieyoung/OnJava8
《On Java 8》中文版，又名《Java编程**》 第5版
Archieyoung/pbmm2
A minimap2 frontend for PacBio native data formats
Archieyoung/pVACtools
Archieyoung/r-index
An optimal space run-length Burrows-Wheeler transform full-text index
Archieyoung/raptor
A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
Archieyoung/samplot
Plot structural variant signals from many BAMs and CRAMs
Archieyoung/SAW
Archieyoung/Severus
A tool for somatic structural variant calling using long reads
Archieyoung/shapeit4
Segmented HAPlotype Estimation and Imputation Tool
Archieyoung/snap
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
Archieyoung/SparkSubmitShell
submit your shell script job to yarn/standalone cluster using spark
Archieyoung/syncmer
Validation of sycnmers compared to minimizers