Pinned Repositories
Abrigahit
Snakefile for assembly of metagenomes with Megahit and resistome profiling with Abricate
amrplusplus_v2
MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-throughput sequencing data
anki-csv-importer
Import local or remote CSV files into Anki from the command line
atlas
ATLAS - Three commands to start analyzing your metagenome data
Biochem-3BP3
Lectures and Lab Exercises for Biochem 3BP3 Practical Bioinformatics for the Genomics Era
bioinformatic-nextflow-pipelines
Collection of bioinformatic pipelines written in nextflow
bioinformatics_curriculum
Some ideas on things to learn to get started with bioinformatics
ECON
ECON: Explicit Clothed humans Obtained from Normals
parse-atlas-GC
parse genecatalog from metagenome atlas
RGI
Snakefile to run Resistance Gene Identifier (RGI) on extracted SNPs from AMRPlusPlus v2.0.
AroArz's Repositories
AroArz/Abrigahit
Snakefile for assembly of metagenomes with Megahit and resistome profiling with Abricate
AroArz/amrplusplus_v2
MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-throughput sequencing data
AroArz/anki-csv-importer
Import local or remote CSV files into Anki from the command line
AroArz/atlas
ATLAS - Three commands to start analyzing your metagenome data
AroArz/Biochem-3BP3
Lectures and Lab Exercises for Biochem 3BP3 Practical Bioinformatics for the Genomics Era
AroArz/bioinformatic-nextflow-pipelines
Collection of bioinformatic pipelines written in nextflow
AroArz/bioinformatics_curriculum
Some ideas on things to learn to get started with bioinformatics
AroArz/ECON
ECON: Explicit Clothed humans Obtained from Normals
AroArz/parse-atlas-GC
parse genecatalog from metagenome atlas
AroArz/RGI
Snakefile to run Resistance Gene Identifier (RGI) on extracted SNPs from AMRPlusPlus v2.0.
AroArz/ShortBred_Singularity_Snakemake
Snakefile to run ShortBred using Singularity container
AroArz/singularity_playground
This repo maintains the definition files used for building singularity images remotely. Each branch maintains a different environment.
AroArz/Snakefiles
workflows using snakemake
AroArz/stag-mwc
StaG Metagenomic Workflow Collaboration
AroArz/StaG-SIS
Singularity in Singularity container for StaG metagenomic workflow
AroArz/Termin-4-Lakarprogrammet-KI
Ankidecks för Termin 4 Läkarprogrammet KI
AroArz/Termin-5-6-Lakarprogrammet-KI
Ankidecks Termin 5 & 6 läkarprogrammet KI
AroArz/Termin-7-Lakarprogrammet-KI
AroArz/Ublastx_stageone
This is the source code for multisamples ARGs profiling using SARG2.0 database