Pinned Repositories
alphafold
Open source code for AlphaFold.
C-TALE-Normalization
Code and examples for C-TALE normalization
coolpuppy
A versatile tool to perform pile-up analysis on Hi-C data in .cool format.
cooltools
The tools for your .cool's
diffexpr
Porting DESeq2 and DEXSeq into python via rpy2
gencode_regions
Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns etc from GTF files
HiCorr
HiCorr: a Hi-C data normalization pipeline
hicplotlib
LASCA_pipeline
Loops And Significant Contacts Annotation pipeline (LASCA_pipeline) is a flexible tool to annotate loops and significant interactions in HiC data.
STORM-microscopy-analysis
This repository contains set of functions that we used to analyze STORM images in our current study
ArtemLuzhin's Repositories
ArtemLuzhin/LASCA_pipeline
Loops And Significant Contacts Annotation pipeline (LASCA_pipeline) is a flexible tool to annotate loops and significant interactions in HiC data.
ArtemLuzhin/C-TALE-Normalization
Code and examples for C-TALE normalization
ArtemLuzhin/alphafold
Open source code for AlphaFold.
ArtemLuzhin/coolpuppy
A versatile tool to perform pile-up analysis on Hi-C data in .cool format.
ArtemLuzhin/cooltools
The tools for your .cool's
ArtemLuzhin/diffexpr
Porting DESeq2 and DEXSeq into python via rpy2
ArtemLuzhin/gencode_regions
Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns etc from GTF files
ArtemLuzhin/HiCorr
HiCorr: a Hi-C data normalization pipeline
ArtemLuzhin/hicplotlib
ArtemLuzhin/STORM-microscopy-analysis
This repository contains set of functions that we used to analyze STORM images in our current study
ArtemLuzhin/mlcourse_open
OpenDataScience Machine Learning course. Both in English and Russian
ArtemLuzhin/pairtools
CLI tools to process mapped Hi-C data
ArtemLuzhin/PePr
a peak-calling and differential analysis tool for replicated ChIP-Seq data
ArtemLuzhin/PSYCHIC
Code for finding putative enhancers using Hi-C data
ArtemLuzhin/RedC_normalization
Normalization script for Red-C method
ArtemLuzhin/test