ArtifactDB

Metadata and file store for arbitrary data objects

Pinned Repositories

alabaster.base
Base methods for the alabaster client framework
Language:C++3 2 80
alabaster.sce
Save and load SingleCellExperiments to file
Language:R1 2 00
alabaster.spatial
Save and load SpatialExperiment objects to file
Language:R1 2 10
BiocObjectSchemas
JSON schemas for Bioconductor objects
1 2 31
calcite-docker
Docker image for the calcite demonstrator
Language:Dockerfile1 2 00
dolomite-base
Save Bioconductor objects in Python.
Language:Python2 3 40
gypsum-worker
Bare-bones ArtifactDB API with Cloudflare
Language:JavaScript1 2 132
uzuki
Safely saving R lists to JSON
Language:C++4 2 00
uzuki2
R lists to HDF5... or JSON, I suppose
Language:C++1 1 20
zircon-R
R interface for AritfactDB APIs
Language:R2 2 20

ArtifactDB's Repositories

ArtifactDB/alabaster.base
Base methods for the alabaster client framework
Language:C++3 2 80
ArtifactDB/dolomite-base
Save Bioconductor objects in Python.
Language:Python2 3 40
ArtifactDB/alabaster.sce
Save and load SingleCellExperiments to file
Language:R1 2 00
ArtifactDB/alabaster.se
Save and load SummarizedExperiment objects to file
Language:R1 2 10
ArtifactDB/alabaster.spatial
Save and load SpatialExperiment objects to file
Language:R1 2 10
ArtifactDB/gobbler
Gobbling up files on a shared filesystem
Language:Go1 3 40
ArtifactDB/gypsum-worker
Bare-bones ArtifactDB API with Cloudflare
Language:JavaScript1 2 132
ArtifactDB/uzuki2
R lists to HDF5... or JSON, I suppose
Language:C++1 1 20
ArtifactDB/alabaster.matrix
Save matrices, arrays and similar objects to file
Language:R0 2 51
ArtifactDB/alabaster.ranges
Save and load genomic ranges to file
Language:R0 2 00
ArtifactDB/alabaster.string
Save and load XStringSets from file
Language:R0 1 00
ArtifactDB/dolomite-mae
Language:Python0 4 00
ArtifactDB/dolomite-sce
Save and load SingleCellExperiments from file.
Language:Python0 3 00
ArtifactDB/alabaster.bumpy
Save and load BumpyMatrix objects from file
Language:R2 0
ArtifactDB/alabaster.files
Saving common bioinformatics formats
Language:R3 0
ArtifactDB/alabaster.mae
Save and load MultiAssayExperiments from file
Language:R2 0
ArtifactDB/alabaster.vcf
Save and load VariantAnnotation::VCF objects from file
Language:R2 0
ArtifactDB/bioconductor-metadata-index
SQLite index for Bioconductor-related metadata in gypsum
Language:JavaScript3 0
ArtifactDB/dolomite-ranges
Save and load genomic ranges in Python
Language:Python3 0
ArtifactDB/dolomite-se
Save and load SummarizedExperiments in Python
Language:Python3 0
ArtifactDB/gobbler-py
Python client for the gobbler
Language:Python3 0
ArtifactDB/gobbler-R
R client for the gobbler service
Language:R3 0
ArtifactDB/gypsum-backup
Backup scripts for the gypsum data store
Language:JavaScript
ArtifactDB/gypsum-metadata-index
Create metadata indices from gypsum-compliant storage based on SQLite
Language:JavaScript3 0
ArtifactDB/gypsum-py
Python client to gpysum
Language:Python3 1
ArtifactDB/gypsum-R
R client for the gypsum REST API
Language:R3 51
ArtifactDB/SewerRat
Indexing user-defined directories on a shared filesystem
Language:Go3 3
ArtifactDB/SewerRat-py
Python client for the SewerRat API
Language:Python3 0
ArtifactDB/SewerRat-R
R client for the SewerRat REST API
Language:R3 0
ArtifactDB/takane
Validators for ArtifactDB file formats.
Language:C++3 12