Artur-man/bootcamp

Biocore bootcamp

Sequence Analysis Bootcamp Winter 2022

This bootcamp intend to use UMMS Cluster and requires UMMS cluster account.

• If you haven't join into Dolphin Group, please follow steps in our Dolphin guide.

• Please join our slack channel to ask your questions. To learn how we use, please check How to use the Bootcamp Slack channel.

• Zoom link for the class: https://zoom.us/j/6173144016?pwd=QlgxU1hoZDhDZFdKTTJEangwRktyQT09

1. Session 1: Linux environment
   
   

2. Session 2.1: UMass Cluster
   

   Session 2.2: Useful commands and tools
   
   

3. Session 3.1: Genomic resources
   

   Session 3.2: FASTA/FASTQ
   

   Session 3.3: SAM/BAM
   
   

4. Session 4: RNA-Seq data processing and analysis
   
   

5. Session 5.1: NGS data processing on DolphinNext
   

   Optional Session: Building Pipeline on DolphinNext
   
   

6. Session 6: R and R Studio
   
   

7. Session 7: DE Analysis using DEBrowser
   
   

8. Session 8: Single Cell RNA Analysis, Day 1
   
   Instructions for Session 8
   
   

9. Session 9: Single Cell RNA Analysis, Day 2