Calculating delta G:s of reactions with compounds lacking formation delta G:s
Asplund-Samuelsson opened this issue · 1 comments
Asplund-Samuelsson commented
The Synechocystis Knoop model reaction R193 (C00440 + C00155 <=> C00101 + C00073) contains compounds C00440 and C00101, which lack an individual formation delta G in Equilibrator. POPPY cannot calculate the delta G of such reactions. However, it is possible to get a reaction delta G at the Equilibrator website, i.e. using the query http://equilibrator.weizmann.ac.il/search?query=C00440+%2B+C00155+%3C%3D%3E+C00101+%2B+C00073. This issue is a request to allow similar delta G calculations in POPPY.
Asplund-Samuelsson commented
This was implemented with the Equilibrator-API in v0.1.3-alpha.