Asplund-Samuelsson/POPPY

Issues

• Option to exclude thermodynamically infeasible reactions before pathway enumeration

  #16 opened 6 years ago by Asplund-Samuelsson
  0

• Calculating delta G:s of reactions with compounds lacking formation delta G:s

  #13 opened 6 years ago by Asplund-Samuelsson
  1

• Equilibrator Gibbs free energy unavailable

  #14 opened 6 years ago by Asplund-Samuelsson
  1

• Implement Equilibrator-API reaction balance check

  #15 opened 6 years ago by Asplund-Samuelsson
  0

• Certain MINE reactions are not balanced in terms of electrons

  #12 opened 7 years ago by Asplund-Samuelsson
  1

• equilibrator_query.py failure

  #1 opened 7 years ago by Asplund-Samuelsson
  1

• Error in MDF step for pathways to Bisphenol A (C13624)

  #2 opened 7 years ago by Asplund-Samuelsson
  1

• Octane to octanol paths problem

  #5 opened 7 years ago by Asplund-Samuelsson
  4

• Compounds without KEGG reaction missing from network?

  #4 opened 7 years ago by Asplund-Samuelsson
  2

• Nodes get the wrong ID ("mid") in graphml

  #6 opened 7 years ago by Asplund-Samuelsson
  1

• Pathway string sorting erroneously imply unique pathways

  #9 opened 7 years ago by Asplund-Samuelsson
  1

• Pathways may contain both forward and reverse directions of the same reaction

  #8 opened 7 years ago by Asplund-Samuelsson
  1

• Linear path-finding ETA is inaccurate

  #11 opened 7 years ago by Asplund-Samuelsson
  1

• Crash during removal of unbalanced reactions when not using --equilibrator_filter

  #10 opened 7 years ago by Asplund-Samuelsson
  1

• Feature request: Shadow prices

  #3 opened 8 years ago by Asplund-Samuelsson
  0

• Feature request: Metabolite statistics for pathways toward a target

  #7 opened 8 years ago by Asplund-Samuelsson
  0