Error in MDF step for pathways to Bisphenol A (C13624)
Asplund-Samuelsson opened this issue · 1 comments
Asplund-Samuelsson commented
61 pathways were generated to Bisphenol A (C13624), but POPPY crashed in the MDF step, displaying this error:
Performing pathway MDF analysis... 61/61 100.0%
Warning message:
In min(df$MDF[df$MDF > 0], na.rm = T) :
no non-missing arguments to min; returning Inf
Warning message:
In max(df$MDF[df$MDF > 0], na.rm = T) :
no non-missing arguments to max; returning -Inf
Error in seq.default(min_MDF, max_MDF, length.out = 5) :
'from' cannot be NA, NaN or infinite
Calls: seq -> seq.default
Execution halted
The following options were used with poppy_path.py:
-d 6 -r 8 --shallow
Asplund-Samuelsson commented
This was an issue with plotting summary figures for the pathway HTML output. The bug was fixed in 6f919fa by adding handling of cases where there are zero feasible pathways.