2. database to browse through the ontology of the Allen Mouse Brain Atlas labels. Simplifies the search for specific region numbers and lists the related parental and child regions
To use the database, create an account here. Find detailed information about the included features and how to use them in our paper and this video tutorial. Use the “Import archive” function to load the template file.
Use the “Import archive” function to load the template file. This will show you all labels and their related parents/child annotations with screenshots of the Allen Mouse Brain Atlas.
Need help? Chat with us and find answers to FAQs in the AIDA_Tools Gitter rooms:
Copyright
The database files were created with Ninox software (Ninox Software GmbH, Kastanienallee 32, 10435 Berlin, Germany).
Creative Commons CC BY: Video tutorial from the publication Niklas Pallast, Frederique Wieters, Marieke Nill, Gereon R Fink, Markus Aswendt, Cloud-based relational database for multimodal animal data, Database, Volume 2018, 2018, bay124, https://doi.org/10.1093/database/bay124
© 2007 Allen Institute for Brain Science. Allen Mouse Brain Atlas. Available from: (https://mouse.brain-map.org)
REFERENCES
- AIDAdb Pallast, Niklas, et al. "Cloud-based relational database for multimodal animal data." Database 2018 (2018)
- Allen Brain Reference Atlas Oh, Seung Wook, et al. "A mesoscale connectome of the mouse brain." Nature 508.7495 (2014): 207. and Lein, E.S. et al. "Genome-wide atlas of gene expression in the adult mouse brain" Nature 445: 168-176 (2007).