Pinned Repositories
2018-10-08-ttt_BiXCoP
AG2PI_GWAS_workshop_June2021
awesome-python
A curated list of awesome Python frameworks, libraries, software and resources
BecA
Notes_and_Projects
bioinfokit
Bioinformatics data analysis and visualization toolkit
Biological_databases_API
An introduction to Biological Databases and how the API can be used to access data
django-tictactoe
My solution for writing a Tic-Tac-Toe game in Django. Useful for people first getting to know Django.
factoextra
Extract and Visualize the Results of Multivariate Data Analyses
figtree-recolor
A script to re-color a FigTree saved Nexus file
FMB_genetic_diversity
The repository contains codes that I used for STRUCTURE analyses, Phylogenetic inference and PCA during MSc project for genetic diversity assessment of eastern Africa finger millet blast fungus.
Atemia's Repositories
Atemia/2018-10-08-ttt_BiXCoP
Atemia/AG2PI_GWAS_workshop_June2021
Atemia/awesome-python
A curated list of awesome Python frameworks, libraries, software and resources
Atemia/BecA
Notes_and_Projects
Atemia/bioinfokit
Bioinformatics data analysis and visualization toolkit
Atemia/Biological_databases_API
An introduction to Biological Databases and how the API can be used to access data
Atemia/factoextra
Extract and Visualize the Results of Multivariate Data Analyses
Atemia/FMB_genetic_diversity
The repository contains codes that I used for STRUCTURE analyses, Phylogenetic inference and PCA during MSc project for genetic diversity assessment of eastern Africa finger millet blast fungus.
Atemia/wild_maize_code_challenge
Atemia/GeneExpressionPlots
A Javascript based tool to visualize gene expression over a custom discrete variable (e.g. time) and grouped by another (e.g. tissue or genotype).
Atemia/In-depth-NGS-Data-Analysis-Course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
Atemia/Intro-to-R
Atemia/intro-to-r-1
Scripts and data to go along with introductions to R
Atemia/Intro2MachineLearning
Atemia/IntroductoryLinux-2019
Atemia/Lab-book
An extension of the original lab book under usadel lab repositories.
Atemia/LowCostOpenAccess
This is a resource where people can get information on journals where they can publish at waived or subsidised APC.
Atemia/module5_quantitative_genetics
Module 5 of the 2018 Bioinformatics CoP at Beca, on quantitative genetics, genotyping-by-sequencing, genome-wide association studies and genomic selection
Atemia/ngphylogeny-django
Atemia/Phylogenetics
This is the repository for the module on phylogenetics (Thursday 11 July 2019)
Atemia/popgenInfo
Vignettes for Population Genetics in R
Atemia/pydata-book
Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media
Atemia/Python4Bioinformatics2019
Updated materials for MSc Bioinformatics for Pwani University
Atemia/PythonMiniProject-Atemia
PythonMiniProject-Atemia created by GitHub Classroom
Atemia/rna-seq-pipeline
Atemia/Scientific_presentation_skills
Atemia/SimpleM
Calculate SimpleM threshold for GWAS significance
Atemia/tidyHeatmap
Draw heatmap simply using a tidy data frame
Atemia/word_cloud
A little word cloud generator in Python
Atemia/Workflows_and_package_management
Reproducibility and package management : workflow languages (CWL, Snakemake, Conda).