Pinned Repositories
Defense_Evo_Model
Script and code for manuscript "Interactive effect matters: a combination of herbivory degree and the ratio of generalist to specialist better predicts evolution of plant defense"
fastEMS
faster analsyis of metacommunity structure with NGS data
FudanFreshman
复旦大学研究生新生入学教育自动答题机（基于Python+Selenium）及参考答案
FungiMetacom
Codes and data for the manuscript: "The characteristic scales for latitudinal distribution and diversity of fungal endophytes"
Individual-Bat-Virome
Codes and data for the manuscript "Wang et al. (2022) The viromes of individual Chiroptera reveal the co-infection, spillover and emergence risk of potential zoonotic viruses"
Latitudinal_Defense_Syndromes
MetaVscan
A virus scanning pipeline for meta-transcriptomic data
MosquitoVirome
NEEA_TOEFL_AUTOMATOR
自动扫描托福考试空余考位
Video2PPT
Video2PPT --> Video to (two) PPT | 提取网课视频中的PPT
Augustpan's Repositories
Augustpan/NEEA_TOEFL_AUTOMATOR
自动扫描托福考试空余考位
Augustpan/Individual-Bat-Virome
Codes and data for the manuscript "Wang et al. (2022) The viromes of individual Chiroptera reveal the co-infection, spillover and emergence risk of potential zoonotic viruses"
Augustpan/MosquitoVirome
Augustpan/MetaVscan
A virus scanning pipeline for meta-transcriptomic data
Augustpan/fastEMS
faster analsyis of metacommunity structure with NGS data
Augustpan/FudanFreshman
复旦大学研究生新生入学教育自动答题机（基于Python+Selenium）及参考答案
Augustpan/FungiMetacom
Codes and data for the manuscript: "The characteristic scales for latitudinal distribution and diversity of fungal endophytes"
Augustpan/GTDB-classify
Tools for classifying bacterial and archaeal species with Genome Taxonomy Database.
Augustpan/NCBI_ORFfinder
docker image for NCBI_ORFfinder
Augustpan/SNPGenie_Data_Prep
Augustpan/alphafold
Open source code for AlphaFold.
Augustpan/bert
TensorFlow code and pre-trained models for BERT
Augustpan/Bioman
Biological data manager -- utility python functions for managing complex bio dataset
Augustpan/Latitudinal_Defense_Syndromes
Augustpan/BioDB
Managing biological datasets.
Augustpan/daily_fudan
一键平安复旦小脚本，自动化快速上报疫情
Augustpan/demo_repo
R data management tutorial repository
Augustpan/EcoBase
Useful databases for ecological studies
Augustpan/empress
Systematic Cophylogeny Reconciliation Tool under Duplication-Transfer-Loss Model.
Augustpan/FunCom
Fungal communities assocatied with an invasive plant.
Augustpan/FundDataClawer
Augustpan/LucaOne
The LucaOne’s model code.
Augustpan/LucaOneTasks
The project of the downstream tasks based on LucaOne's Embedding.
Augustpan/LucaProt
LucaProt: A novel deep learning framework that incorporates protein amino acid sequence and structure information to predict protein function.
Augustpan/MosquitoCalling
Mosquito species calling pipeline
Augustpan/pet-infectome
Total infectome characterisation of pet dogs and cats in China.
Augustpan/pm25_trial
环境医学综合实验（环境卫生学部分），运动干预与PM2.5诱导的氧化应激反应。
Augustpan/social_media_user_modeling
翻到电脑里大一时上人工智能课的时候做的final project，上传保存一下
Augustpan/WHO_disease_outbreak_news
An exploration of the WHO disease outbreak news (DONs) from 1996 to 2020.
Augustpan/zoonotic_rank
Code and data used in Mollentze et al. (2020) "Identifying and prioritizing potential human-infecting viruses from their genome sequences".